Wall clock time and date at job start Sun Mar 29 2020 21:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48503 * 109.47163 * 239.99997 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47290 * 119.99992 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.47849 * 110.99577 * 290.83491 * 13 12 10 15 15 C 1.54909 * 104.79606 * 213.63762 * 14 13 12 16 16 C 1.55134 * 101.65197 * 37.07631 * 15 14 13 17 17 C 1.47445 * 110.99754 * 169.99984 * 13 12 10 18 18 H 1.09002 * 109.88756 * 242.65617 * 17 13 12 19 19 C 1.52999 * 109.89270 * 3.68592 * 17 13 12 20 20 C 1.52995 * 117.49959 * 248.62210 * 19 17 13 21 21 C 1.53000 * 60.00175 * 252.50831 * 20 19 17 22 22 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 23 23 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 24 24 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 25 25 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 26 26 H 1.08995 * 110.37690 * 332.47115 * 14 13 12 27 27 H 1.09003 * 110.36777 * 94.81322 * 14 13 12 28 28 H 1.09005 * 110.99209 * 278.98235 * 15 14 13 29 29 H 1.08996 * 111.01927 * 155.18083 * 15 14 13 30 30 H 1.09004 * 110.70739 * 205.96314 * 16 15 14 31 31 H 1.08997 * 110.70731 * 82.72555 * 16 15 14 32 32 H 1.09003 * 115.54808 * 34.32963 * 19 17 13 33 33 H 1.08995 * 117.49876 * 0.02562 * 20 19 17 34 34 H 1.08999 * 117.49950 * 145.01503 * 20 19 17 35 35 H 1.09000 * 117.49563 * 252.51027 * 21 20 19 36 36 H 1.08997 * 117.49784 * 107.48519 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 2.9158 -6.0636 -1.2884 15 6 3.1542 -7.5781 -1.5104 16 6 1.8429 -8.1874 -0.9484 17 6 1.5114 -7.2619 0.2412 18 1 1.8707 -7.7074 1.1689 19 6 0.0005 -7.0356 0.3238 20 6 -0.6701 -7.2333 1.6846 21 6 -0.8847 -8.2590 0.5699 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 -0.0038 24 1 0.6175 -4.9205 0.8914 25 1 0.6168 -4.9209 -0.8885 26 1 2.3026 -5.6543 -2.0911 27 1 3.8670 -5.5346 -1.2288 28 1 4.0194 -7.9243 -0.9449 29 1 3.2671 -7.8048 -2.5706 30 1 2.0080 -9.2094 -0.6072 31 1 1.0504 -8.1528 -1.6960 32 1 -0.3934 -6.2512 -0.3226 33 1 -0.0349 -7.5241 2.5212 34 1 -1.5053 -6.5787 1.9340 35 1 -1.8611 -8.2793 0.0859 36 1 -0.3906 -9.2251 0.6730 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:53 Heat of formation + Delta-G solvation = -2.076698 kcal Electronic energy + Delta-G solvation = -17253.877776 eV Core-core repulsion = 14545.877944 eV Total energy + Delta-G solvation = -2707.999832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78642 -37.71434 -36.01394 -33.84457 -31.88910 -31.06167 -28.58938 -26.62044 -24.18441 -22.67529 -22.29485 -20.87668 -19.93713 -18.54281 -17.68910 -16.63978 -15.77941 -15.13959 -14.75728 -14.38514 -14.24913 -13.94707 -13.72270 -12.94013 -12.79104 -12.42016 -11.92097 -11.67950 -11.56766 -11.42561 -11.21602 -11.07994 -10.87378 -10.82907 -10.51291 -10.40272 -10.21392 -10.15730 -9.90128 -9.42726 -8.34618 -7.90492 -7.73908 -6.36160 -3.76586 3.23670 3.28614 3.33315 3.73053 3.98985 4.13511 4.35526 4.59500 4.77626 4.87647 4.97894 5.11449 5.18186 5.28719 5.34906 5.40456 5.59541 5.62747 5.71252 5.83694 5.88790 5.91017 5.98554 6.02650 6.04482 6.11516 6.30683 6.38024 6.43426 6.57695 7.38616 7.41235 7.60079 8.12529 8.69007 9.24360 9.61591 10.14439 10.81839 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.005847 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.913594 B = 4787.885375 C = 5405.715256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.444 3.556 11 O -0.578 6.578 12 C 0.044 3.956 13 N -0.498 5.498 14 C 0.051 3.949 15 C -0.132 4.132 16 C -0.133 4.133 17 C 0.103 3.897 18 H 0.083 0.917 19 C -0.175 4.175 20 C -0.174 4.174 21 C -0.178 4.178 22 H 0.271 0.729 23 H 0.391 0.609 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -14.884 -1.136 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.088 4.088 13 N -0.221 5.221 14 C -0.077 4.077 15 C -0.170 4.170 16 C -0.172 4.172 17 C -0.006 4.006 18 H 0.100 0.900 19 C -0.194 4.194 20 C -0.211 4.211 21 C -0.215 4.215 22 H 0.081 0.919 23 H 0.224 0.776 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.451 -14.600 -0.725 14.690 hybrid contribution -0.967 0.799 -0.611 1.395 sum -2.418 -13.801 -1.336 14.075 Atomic orbital electron populations 1.69605 1.05913 1.28126 1.50967 1.25239 0.95618 0.99630 0.97517 0.85931 0.78746 0.80571 0.79029 1.19979 1.21028 1.19929 1.19644 0.93305 0.82296 1.47437 0.88049 1.41849 1.09101 1.04564 1.64942 1.19881 0.88462 0.84652 0.84093 1.90498 1.13758 1.87083 1.54807 1.22131 0.94214 0.91163 1.01274 1.63419 1.25162 1.00870 1.32679 1.23058 1.00277 0.95068 0.89258 1.22748 0.97655 0.95968 1.00646 1.22798 0.97729 0.98929 0.97730 1.22123 0.89339 0.90467 0.98622 0.89951 1.22994 0.94751 1.00846 1.00800 1.23000 1.03187 1.02685 0.92255 1.22897 1.00876 0.94223 1.03553 0.91923 0.77594 0.89001 0.93514 0.94237 0.88933 0.90854 0.91212 0.91246 0.91364 0.87014 0.88663 0.88784 0.89077 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 10 C 0.44 10.86 7.58 -10.98 -0.08 10.77 16 11 O -0.58 -16.07 14.61 5.55 0.08 -15.99 16 12 C 0.04 0.82 3.99 -4.98 -0.02 0.80 16 13 N -0.50 -8.75 4.86 -224.77 -1.09 -9.85 16 14 C 0.05 0.85 5.74 -2.29 -0.01 0.84 16 15 C -0.13 -1.67 7.08 -24.60 -0.17 -1.84 16 16 C -0.13 -1.54 6.21 -24.91 -0.15 -1.70 16 17 C 0.10 1.41 3.60 -66.72 -0.24 1.16 16 18 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 19 C -0.18 -2.17 3.36 -90.62 -0.30 -2.47 16 20 C -0.17 -1.96 10.07 -26.73 -0.27 -2.23 16 21 C -0.18 -1.79 9.97 -26.73 -0.27 -2.06 16 22 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 23 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 24 H 0.09 1.62 6.83 -51.93 -0.35 1.27 16 25 H 0.05 0.81 6.65 -51.93 -0.35 0.47 16 26 H 0.04 0.67 7.62 -51.93 -0.40 0.28 16 27 H 0.09 1.79 7.38 -51.93 -0.38 1.41 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.11 1.49 5.83 -51.93 -0.30 1.18 16 33 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -30.95 291.85 -8.13 -39.08 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.39 Total: 9.95 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.77 Total: -4.85 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.43 Total: -48.97 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.95 -8.13 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.001 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds