Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00126 * 3 2 1 5 5 H 1.48502 * 109.46691 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47032 * 119.99659 * 3 2 1 7 7 C 1.40054 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99809 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99861 * 359.97438 * 9 7 2 11 11 N 1.34772 * 119.99788 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99634 * 179.97438 * 11 9 7 13 13 H 1.08994 * 110.63122 * 31.89546 * 12 11 9 14 14 C 1.55136 * 110.70349 * 268.59538 * 12 11 9 15 15 C 1.54907 * 101.65108 * 205.96412 * 14 12 11 16 16 N 1.47847 * 104.79749 * 37.07326 * 15 14 12 17 17 C 1.46898 * 111.00134 * 213.63125 * 16 15 14 18 18 C 1.52989 * 109.47401 * 290.84435 * 17 16 15 19 19 C 1.53000 * 117.50008 * 243.62121 * 18 17 16 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 17 21 21 C 1.47439 * 108.56501 * 335.90560 * 16 15 14 22 22 H 0.96995 * 119.99976 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00645 * 359.97438 * 11 9 7 24 24 H 1.08990 * 110.99692 * 324.05891 * 14 12 11 25 25 H 1.09005 * 110.99213 * 87.84139 * 14 12 11 26 26 H 1.08997 * 110.37597 * 278.24315 * 15 14 12 27 27 H 1.09002 * 110.37408 * 155.90083 * 15 14 12 28 28 H 1.09004 * 109.46827 * 170.83925 * 17 16 15 29 29 H 1.09002 * 109.46834 * 50.84958 * 17 16 15 30 30 H 1.09004 * 115.56709 * 29.30854 * 18 17 16 31 31 H 1.09002 * 117.49696 * 0.02562 * 19 18 17 32 32 H 1.09002 * 117.50343 * 145.02258 * 19 18 17 33 33 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 34 34 H 1.08997 * 117.50044 * 107.48590 * 20 19 18 35 35 H 1.08996 * 109.89139 * 120.39001 * 21 16 15 36 36 H 1.08996 * 109.88729 * 241.42274 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4806 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2163 -4.9165 0.0011 13 1 0.2741 -4.8161 -0.5375 14 6 0.9734 -5.4089 1.4521 15 6 0.8510 -6.9394 1.2466 16 7 1.8350 -7.2585 0.1903 17 6 1.3592 -8.3602 -0.6569 18 6 1.3583 -9.6602 0.1497 19 6 2.2928 -10.7796 -0.3135 20 6 0.7826 -10.9083 -0.5225 21 6 2.0763 -6.0433 -0.6090 22 1 -0.4850 0.8400 0.0004 23 1 2.9189 -3.6478 0.0002 24 1 1.8210 -5.1676 2.0934 25 1 0.0501 -4.9936 1.8560 26 1 -0.1555 -7.1990 0.9186 27 1 1.0987 -7.4669 2.1678 28 1 2.0189 -8.4673 -1.5181 29 1 0.3471 -8.1442 -0.9993 30 1 1.2003 -9.5481 1.2224 31 1 2.9085 -10.5897 -1.1926 32 1 2.7495 -11.4040 0.4544 33 1 0.2459 -11.6172 0.1079 34 1 0.4045 -10.8032 -1.5394 35 1 3.1308 -5.7718 -0.5620 36 1 1.7840 -6.2166 -1.6447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613946489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = -12.736487 kcal Electronic energy + Delta-G solvation = -16731.921771 eV Core-core repulsion = 14023.459696 eV Total energy + Delta-G solvation = -2708.462075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.22357 -37.46300 -36.39849 -33.11519 -32.23801 -30.27792 -28.25318 -26.37126 -25.10161 -22.50976 -21.48117 -20.80376 -20.04141 -19.46546 -17.25645 -16.27884 -15.67068 -15.33076 -14.81493 -14.44360 -13.95695 -13.82742 -13.51912 -12.78754 -12.53164 -12.49411 -11.98838 -11.86466 -11.65981 -11.29457 -11.14920 -11.06002 -10.91073 -10.71538 -10.45981 -10.40962 -10.28389 -10.20770 -10.07351 -8.84492 -8.18132 -7.62447 -7.49723 -6.18349 -4.64074 3.16321 3.21070 3.23025 3.62725 4.04211 4.13365 4.56179 4.63411 4.80842 4.81409 4.90740 5.10016 5.21400 5.33181 5.47668 5.51912 5.55822 5.58735 5.69847 5.75496 5.81727 5.87879 5.96724 5.99305 6.15672 6.20231 6.30926 6.57417 6.70292 7.10032 7.20158 7.43581 7.93292 8.11161 8.33636 9.02613 9.54041 10.60298 10.78770 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.072944 B = 0.004202 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.766108 B = 6662.328306 C = 6787.407788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.756 5.756 12 C 0.140 3.860 13 H 0.082 0.918 14 C -0.140 4.140 15 C 0.043 3.957 16 N -0.525 5.525 17 C 0.080 3.920 18 C -0.141 4.141 19 C -0.176 4.176 20 C -0.185 4.185 21 C 0.037 3.963 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -15.837 -0.214 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.411 5.411 12 C 0.032 3.968 13 H 0.100 0.900 14 C -0.179 4.179 15 C -0.084 4.084 16 N -0.249 5.249 17 C -0.048 4.048 18 C -0.160 4.160 19 C -0.213 4.213 20 C -0.223 4.223 21 C -0.092 4.092 22 H 0.079 0.921 23 H 0.213 0.787 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.354 -15.875 -0.011 16.226 hybrid contribution 0.184 0.963 -0.355 1.043 sum 3.537 -14.913 -0.366 15.331 Atomic orbital electron populations 1.70010 1.07059 1.27350 1.35301 1.25709 0.94618 1.00288 0.92610 0.86428 0.79806 0.81023 0.79449 1.19289 1.20593 1.19279 1.20859 0.93576 0.89412 1.54428 0.91455 1.18228 0.87225 0.82457 0.76172 1.90592 1.14099 1.86799 1.54942 1.46097 1.08396 1.04384 1.82185 1.21653 0.96003 0.84781 0.94407 0.89978 1.23138 1.02670 0.93247 0.98890 1.23034 0.93587 0.96541 0.95283 1.63552 1.43268 1.05758 1.12361 1.21887 0.98537 0.89716 0.94700 1.22237 1.04320 0.89362 1.00036 1.22979 0.92601 1.02465 1.03245 1.22975 0.96555 1.00762 1.02001 1.23061 1.00984 0.89290 0.95833 0.92077 0.78664 0.90823 0.90741 0.93653 0.90701 0.90917 0.94260 0.87528 0.88891 0.89065 0.88942 0.88956 0.90224 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.13 11.83 55.55 0.66 -22.47 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.16 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.78 7.75 -12.99 -0.10 15.68 16 10 O -0.58 -18.80 14.66 5.20 0.08 -18.72 16 11 N -0.76 -16.90 5.17 -53.44 -0.28 -17.18 16 12 C 0.14 2.70 3.31 -66.10 -0.22 2.48 16 13 H 0.08 1.81 7.55 -51.93 -0.39 1.42 16 14 C -0.14 -2.45 6.76 -24.60 -0.17 -2.62 16 15 C 0.04 0.62 5.87 -2.30 -0.01 0.60 16 16 N -0.53 -7.38 5.16 -231.26 -1.19 -8.57 16 17 C 0.08 0.96 4.85 -3.83 -0.02 0.94 16 18 C -0.14 -1.48 5.73 -90.62 -0.52 -2.00 16 19 C -0.18 -1.61 10.18 -26.73 -0.27 -1.89 16 20 C -0.19 -1.65 10.25 -26.73 -0.27 -1.92 16 21 C 0.04 0.57 6.62 -2.84 -0.02 0.55 16 22 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 23 H 0.38 7.55 8.35 -40.82 -0.34 7.21 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.05 0.63 7.62 -51.93 -0.40 0.24 16 27 H 0.07 0.97 7.93 -51.93 -0.41 0.55 16 28 H 0.07 0.83 7.76 -51.93 -0.40 0.43 16 29 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 30 H 0.11 1.17 7.35 -51.93 -0.38 0.79 16 31 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 36 H 0.05 0.80 7.55 -51.93 -0.39 0.41 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -32.92 298.60 -8.90 -41.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.60 Total: 7.06 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.04 Total: -1.60 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.81 Total: -48.23 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.72 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.92 -8.90 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613946489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds