Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48493 * 109.47416 * 240.00126 * 3 2 1 5 5 H 1.48502 * 109.46691 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47032 * 119.99659 * 3 2 1 7 7 C 1.40054 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99809 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99861 * 359.97438 * 9 7 2 11 11 N 1.34772 * 119.99788 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99634 * 179.97438 * 11 9 7 13 13 H 1.08994 * 110.63122 * 31.89546 * 12 11 9 14 14 C 1.55136 * 110.70349 * 268.59538 * 12 11 9 15 15 C 1.54907 * 101.65108 * 205.96412 * 14 12 11 16 16 N 1.47847 * 104.79749 * 37.07326 * 15 14 12 17 17 C 1.46898 * 111.00134 * 213.63125 * 16 15 14 18 18 C 1.52989 * 109.47401 * 290.84435 * 17 16 15 19 19 C 1.53000 * 117.50008 * 243.62121 * 18 17 16 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 17 21 21 C 1.47439 * 108.56501 * 335.90560 * 16 15 14 22 22 H 0.96995 * 119.99976 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00645 * 359.97438 * 11 9 7 24 24 H 1.08990 * 110.99692 * 324.05891 * 14 12 11 25 25 H 1.09005 * 110.99213 * 87.84139 * 14 12 11 26 26 H 1.08997 * 110.37597 * 278.24315 * 15 14 12 27 27 H 1.09002 * 110.37408 * 155.90083 * 15 14 12 28 28 H 1.09004 * 109.46827 * 170.83925 * 17 16 15 29 29 H 1.09002 * 109.46834 * 50.84958 * 17 16 15 30 30 H 1.09004 * 115.56709 * 29.30854 * 18 17 16 31 31 H 1.09002 * 117.49696 * 0.02562 * 19 18 17 32 32 H 1.09002 * 117.50343 * 145.02258 * 19 18 17 33 33 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 34 34 H 1.08997 * 117.50044 * 107.48590 * 20 19 18 35 35 H 1.08996 * 109.89139 * 120.39001 * 21 16 15 36 36 H 1.08996 * 109.88729 * 241.42274 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4806 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2163 -4.9165 0.0011 13 1 0.2741 -4.8161 -0.5375 14 6 0.9734 -5.4089 1.4521 15 6 0.8510 -6.9394 1.2466 16 7 1.8350 -7.2585 0.1903 17 6 1.3592 -8.3602 -0.6569 18 6 1.3583 -9.6602 0.1497 19 6 2.2928 -10.7796 -0.3135 20 6 0.7826 -10.9083 -0.5225 21 6 2.0763 -6.0433 -0.6090 22 1 -0.4850 0.8400 0.0004 23 1 2.9189 -3.6478 0.0002 24 1 1.8210 -5.1676 2.0934 25 1 0.0501 -4.9936 1.8560 26 1 -0.1555 -7.1990 0.9186 27 1 1.0987 -7.4669 2.1678 28 1 2.0189 -8.4673 -1.5181 29 1 0.3471 -8.1442 -0.9993 30 1 1.2003 -9.5481 1.2224 31 1 2.9085 -10.5897 -1.1926 32 1 2.7495 -11.4040 0.4544 33 1 0.2459 -11.6172 0.1079 34 1 0.4045 -10.8032 -1.5394 35 1 3.1308 -5.7718 -0.5620 36 1 1.7840 -6.2166 -1.6447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613946489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = -36.773575 kcal Electronic energy + Delta-G solvation = -16732.964097 eV Core-core repulsion = 14023.459696 eV Total energy + Delta-G solvation = -2709.504401 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56989 -39.02871 -37.72087 -34.95923 -34.30062 -31.71957 -29.74083 -28.18933 -26.46308 -23.20095 -22.82517 -22.29718 -21.34859 -20.99896 -19.23917 -17.61215 -17.24462 -16.99016 -16.13849 -15.68614 -15.51488 -15.03710 -14.80694 -14.56785 -14.28686 -13.84706 -13.55171 -13.24094 -12.86298 -12.80076 -12.62892 -12.49952 -12.34430 -12.21366 -12.04922 -11.98242 -11.80272 -11.15222 -10.92074 -10.86646 -9.87663 -9.47731 -9.32137 -8.29397 -6.86238 1.40399 1.43911 1.55597 2.24593 2.46391 2.72192 3.02305 3.21337 3.50731 3.69872 3.82775 3.96221 4.06796 4.11260 4.22691 4.31921 4.35462 4.48240 4.62374 4.69141 4.73804 4.83677 4.83911 5.01128 5.08052 5.10082 5.16710 5.30655 5.31554 5.34882 5.86868 5.89057 6.08080 6.23017 6.29147 6.86348 7.54817 8.49065 8.67052 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.072944 B = 0.004202 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.766108 B = 6662.328306 C = 6787.407788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.744 5.744 12 C 0.132 3.868 13 H 0.047 0.953 14 C -0.137 4.137 15 C 0.056 3.944 16 N -0.522 5.522 17 C 0.079 3.921 18 C -0.156 4.156 19 C -0.171 4.171 20 C -0.177 4.177 21 C 0.050 3.950 22 H 0.274 0.726 23 H 0.396 0.604 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -16.617 -0.256 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.611 4.611 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.397 5.397 12 C 0.024 3.976 13 H 0.065 0.935 14 C -0.176 4.176 15 C -0.072 4.072 16 N -0.247 5.247 17 C -0.049 4.049 18 C -0.174 4.174 19 C -0.208 4.208 20 C -0.215 4.215 21 C -0.078 4.078 22 H 0.084 0.916 23 H 0.230 0.770 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.385 -16.719 -0.053 17.565 hybrid contribution -0.455 1.114 -0.349 1.253 sum 4.929 -15.605 -0.402 16.370 Atomic orbital electron populations 1.70185 1.09559 1.28989 1.36464 1.26993 0.95530 1.05013 0.91177 0.85052 0.78166 0.74637 0.80311 1.17765 1.19992 1.17832 1.21422 0.94788 0.90089 1.54786 0.89365 1.18608 0.86847 0.84346 0.75881 1.90547 1.16241 1.87914 1.57287 1.45749 1.09066 1.04170 1.80753 1.21784 0.95180 0.84760 0.95833 0.93507 1.23033 1.01417 0.95794 0.97371 1.22964 0.94012 0.93842 0.96402 1.63648 1.43266 1.05386 1.12354 1.21955 0.98315 0.89633 0.94950 1.22155 1.06429 0.89148 0.99710 1.23058 0.92838 1.01456 1.03474 1.23054 0.96613 0.99581 1.02205 1.22925 1.00533 0.88269 0.96106 0.91597 0.76965 0.90708 0.93209 0.93404 0.88577 0.90063 0.94838 0.87891 0.88554 0.88187 0.87884 0.88553 0.89148 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.87 11.83 21.84 0.26 -50.61 16 2 C 0.03 1.57 5.50 85.31 0.47 2.04 16 3 Si 1.00 41.12 29.56 68.60 2.03 43.15 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.57 -32.79 9.54 24.83 0.24 -32.55 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 9 C 0.54 31.60 7.75 86.36 0.67 32.27 16 10 O -0.63 -42.91 14.66 -4.31 -0.06 -42.98 16 11 N -0.74 -33.79 5.17 -441.22 -2.28 -36.07 16 12 C 0.13 5.21 3.31 46.17 0.15 5.36 16 13 H 0.05 2.18 7.55 -2.39 -0.02 2.16 16 14 C -0.14 -4.86 6.76 31.98 0.22 -4.64 16 15 C 0.06 1.52 5.87 86.77 0.51 2.03 16 16 N -0.52 -13.79 5.16 -885.57 -4.57 -18.37 16 17 C 0.08 1.76 4.85 86.30 0.42 2.18 16 18 C -0.16 -2.94 5.73 -10.80 -0.06 -3.00 16 19 C -0.17 -2.69 10.18 30.59 0.31 -2.38 16 20 C -0.18 -2.71 10.25 30.60 0.31 -2.40 16 21 C 0.05 1.50 6.62 86.65 0.57 2.07 16 22 H 0.27 15.38 8.29 -92.71 -0.77 14.62 16 23 H 0.40 15.51 8.35 -92.71 -0.77 14.74 16 24 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.05 1.30 7.62 -2.39 -0.02 1.28 16 27 H 0.10 2.28 7.93 -2.39 -0.02 2.26 16 28 H 0.08 1.67 7.76 -2.39 -0.02 1.65 16 29 H 0.03 0.79 7.85 -2.39 -0.02 0.77 16 30 H 0.10 2.03 7.35 -2.38 -0.02 2.01 16 31 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.54 7.72 -2.39 -0.02 2.52 16 36 H 0.06 1.77 7.55 -2.39 -0.02 1.75 16 Total: -1.00 -73.48 298.60 -0.53 -74.01 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.29 Total: 29.89 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 3.81 Total: 0.98 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.59 Total: -105.05 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.06 Total: -42.98 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -73.48 -0.53 -74.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613946489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.239 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds