Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30255 * 125.61668 * 2 1 4 4 C 1.34474 * 108.70202 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.16904 * 179.97438 * 4 3 2 6 6 C 1.34331 * 107.67152 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.44894 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.46751 * 90.00273 * 7 6 4 9 9 C 1.46904 * 110.99882 * 293.95183 * 8 7 6 10 10 C 1.46904 * 110.99713 * 170.00089 * 8 7 6 11 11 H 1.09005 * 109.47078 * 59.99805 * 10 8 7 12 12 C 1.53000 * 109.47015 * 299.99977 * 10 8 7 13 13 C 1.50696 * 109.46794 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 O 1.33963 * 125.62207 * 180.28800 * 2 1 3 22 22 H 1.08993 * 109.47313 * 90.02734 * 1 2 3 23 23 H 1.09006 * 109.47025 * 210.02461 * 1 2 3 24 24 H 1.09000 * 109.47524 * 330.02365 * 1 2 3 25 25 H 1.09003 * 109.47128 * 269.99831 * 5 4 3 26 26 H 1.08998 * 109.46965 * 30.00020 * 5 4 3 27 27 H 1.09004 * 109.47071 * 149.99566 * 5 4 3 28 28 H 1.08993 * 109.46820 * 330.00262 * 7 6 4 29 29 H 1.09003 * 109.46823 * 210.00225 * 7 6 4 30 30 H 1.09001 * 109.47028 * 296.04863 * 9 8 7 31 31 H 1.09004 * 109.46903 * 56.05040 * 9 8 7 32 32 H 1.09000 * 109.47139 * 176.04661 * 9 8 7 33 33 H 1.08997 * 109.46749 * 299.99841 * 12 10 8 34 34 H 1.08996 * 109.47024 * 59.99984 * 12 10 8 35 35 H 1.08998 * 109.46637 * 179.97438 * 12 10 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 4.7570 1.5728 0.0002 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5548 0.0029 8 7 5.1904 -1.8395 1.3884 9 6 5.6373 -0.6172 2.0698 10 6 6.2282 -2.8782 1.4360 11 1 7.1053 -2.5411 0.8835 12 6 5.6915 -4.1646 0.8051 13 6 6.6091 -3.1423 2.8699 14 1 6.1281 -2.5938 3.6662 15 6 7.5710 -4.0850 3.1652 16 7 7.9031 -4.3159 4.4166 17 14 8.4023 -5.0343 1.7878 18 1 7.6318 -6.2715 1.5040 19 1 8.4530 -4.1914 0.5662 20 1 9.7833 -5.3944 2.1983 21 8 2.2872 -1.0889 -0.0055 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.0477 1.7903 -1.0275 26 1 4.5128 2.5029 0.5134 27 1 5.5819 1.0799 0.5147 28 1 5.6084 -1.0443 -0.5106 29 1 4.5699 -2.4899 -0.5105 30 1 6.5350 -0.2370 1.5823 31 1 4.8502 0.1352 2.0197 32 1 5.8583 -0.8429 3.1131 33 1 4.8144 -4.5017 1.3575 34 1 5.4162 -3.9732 -0.2321 35 1 6.4616 -4.9351 0.8400 36 1 8.5795 -4.9794 4.6244 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618904927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = 34.977966 kcal Electronic energy + Delta-G solvation = -17423.925400 eV Core-core repulsion = 14717.532379 eV Total energy + Delta-G solvation = -2706.393021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.13291 -37.52649 -34.95199 -33.40839 -32.21266 -30.34450 -29.12540 -28.72320 -25.52338 -24.40688 -23.11854 -21.50377 -20.43469 -19.49124 -16.94724 -16.68310 -16.32780 -15.28026 -14.68764 -14.42585 -13.99920 -13.88755 -13.24423 -13.13128 -13.03522 -12.89630 -12.61198 -12.42210 -12.23647 -11.94393 -11.87240 -11.12551 -10.92658 -10.70580 -10.67545 -10.57516 -10.19484 -10.15719 -9.57651 -9.12700 -8.62111 -8.33445 -7.49990 -6.11825 -4.11362 1.64728 2.78987 2.87885 3.22622 3.31357 3.34568 4.11817 4.34428 4.71227 4.97999 5.00930 5.18708 5.24097 5.28093 5.40449 5.52252 5.66238 5.70295 5.82529 5.88154 5.98404 6.14476 6.19202 6.24834 6.34346 6.41768 6.48658 6.54773 6.69980 6.84487 7.17699 7.47970 7.79698 7.90778 7.96701 8.56843 8.94244 9.48924 11.00741 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.006140 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.928021 B = 4559.056498 C = 4729.721772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.174 3.826 3 N -0.483 5.483 4 C -0.020 4.020 5 C -0.079 4.079 6 C -0.014 4.014 7 C 0.125 3.875 8 N -0.523 5.523 9 C 0.029 3.971 10 C 0.183 3.817 11 H 0.002 0.998 12 C -0.149 4.149 13 C -0.508 4.508 14 H 0.084 0.916 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.269 1.269 20 H -0.296 1.296 21 O -0.193 6.193 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.019 0.981 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 7.687 -10.585 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.033 4.033 3 N -0.214 5.214 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.067 4.067 7 C -0.004 4.004 8 N -0.248 5.248 9 C -0.118 4.118 10 C 0.076 3.924 11 H 0.019 0.981 12 C -0.207 4.207 13 C -0.546 4.546 14 H 0.102 0.898 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.194 1.194 20 H -0.224 1.224 21 O -0.079 6.079 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.877 7.951 -10.203 16.275 hybrid contribution 1.399 -1.049 -1.051 2.040 sum -8.477 6.902 -11.254 15.689 Atomic orbital electron populations 1.20167 0.81717 1.04904 1.04171 1.26080 0.96308 0.79009 1.01883 1.70263 1.01736 1.30472 1.18947 1.21407 0.93177 0.92205 1.07295 1.20333 0.92603 0.98138 1.02535 1.23278 0.83519 0.94550 1.05397 1.20575 0.88616 0.97599 0.93567 1.61948 1.42596 1.09461 1.10771 1.22488 0.96972 0.90954 1.01421 1.19736 0.87337 0.87303 0.97976 0.98076 1.22256 1.01361 0.99159 0.97876 1.20939 1.21099 1.22290 0.90245 0.89818 1.24916 0.96290 0.96548 0.95304 1.69875 1.32113 1.34105 1.17406 0.86885 0.78049 0.80711 0.82704 1.20465 1.19419 1.22389 1.84393 1.16708 1.37316 1.69488 0.89411 0.89456 0.88452 0.91285 0.90796 0.89874 0.92124 0.88862 0.96273 0.92939 0.89614 0.91840 0.95172 0.93758 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.51 36.00 0.38 -0.10 16 2 C 0.17 2.59 8.34 -12.95 -0.11 2.48 16 3 N -0.48 -7.95 11.29 -7.36 -0.08 -8.04 16 4 C -0.02 -0.33 6.17 -82.81 -0.51 -0.85 16 5 C -0.08 -1.05 9.46 36.01 0.34 -0.71 16 6 C -0.01 -0.23 6.28 -35.69 -0.22 -0.46 16 7 C 0.12 2.18 5.01 -4.97 -0.02 2.15 16 8 N -0.52 -10.87 4.61 -237.72 -1.10 -11.96 16 9 C 0.03 0.57 7.69 60.07 0.46 1.03 16 10 C 0.18 4.26 1.65 -68.86 -0.11 4.15 16 11 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 12 C -0.15 -3.22 8.47 37.16 0.31 -2.91 16 13 C -0.51 -13.95 8.51 -34.44 -0.29 -14.24 16 14 H 0.08 2.51 6.64 -52.49 -0.35 2.16 16 15 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 16 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 17 Si 0.89 21.49 24.37 -169.99 -4.14 17.34 16 18 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 19 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 20 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 21 O -0.19 -3.30 10.78 5.35 0.06 -3.25 16 22 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.11 4.74 -51.93 -0.25 0.87 16 28 H 0.06 0.96 7.77 -51.93 -0.40 0.56 16 29 H 0.09 1.58 5.83 -51.93 -0.30 1.27 16 30 H 0.02 0.34 7.33 -51.93 -0.38 -0.04 16 31 H 0.05 0.94 5.28 -51.93 -0.27 0.66 16 32 H 0.09 1.85 6.23 -51.93 -0.32 1.53 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.03 0.55 6.20 -51.93 -0.32 0.23 16 35 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -31.72 280.71 -5.00 -36.72 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.86 Total: -1.32 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 0.12 Total: -7.53 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.41 Total: -46.19 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.72 -5.00 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.697 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds