Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30255 * 125.61668 * 2 1 4 4 C 1.34474 * 108.70202 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.16904 * 179.97438 * 4 3 2 6 6 C 1.34331 * 107.67152 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.44894 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.46751 * 90.00273 * 7 6 4 9 9 C 1.46904 * 110.99882 * 293.95183 * 8 7 6 10 10 C 1.46904 * 110.99713 * 170.00089 * 8 7 6 11 11 H 1.09005 * 109.47078 * 59.99805 * 10 8 7 12 12 C 1.53000 * 109.47015 * 299.99977 * 10 8 7 13 13 C 1.50696 * 109.46794 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 O 1.33963 * 125.62207 * 180.28800 * 2 1 3 22 22 H 1.08993 * 109.47313 * 90.02734 * 1 2 3 23 23 H 1.09006 * 109.47025 * 210.02461 * 1 2 3 24 24 H 1.09000 * 109.47524 * 330.02365 * 1 2 3 25 25 H 1.09003 * 109.47128 * 269.99831 * 5 4 3 26 26 H 1.08998 * 109.46965 * 30.00020 * 5 4 3 27 27 H 1.09004 * 109.47071 * 149.99566 * 5 4 3 28 28 H 1.08993 * 109.46820 * 330.00262 * 7 6 4 29 29 H 1.09003 * 109.46823 * 210.00225 * 7 6 4 30 30 H 1.09001 * 109.47028 * 296.04863 * 9 8 7 31 31 H 1.09004 * 109.46903 * 56.05040 * 9 8 7 32 32 H 1.09000 * 109.47139 * 176.04661 * 9 8 7 33 33 H 1.08997 * 109.46749 * 299.99841 * 12 10 8 34 34 H 1.08996 * 109.47024 * 59.99984 * 12 10 8 35 35 H 1.08998 * 109.46637 * 179.97438 * 12 10 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 4.7570 1.5728 0.0002 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5548 0.0029 8 7 5.1904 -1.8395 1.3884 9 6 5.6373 -0.6172 2.0698 10 6 6.2282 -2.8782 1.4360 11 1 7.1053 -2.5411 0.8835 12 6 5.6915 -4.1646 0.8051 13 6 6.6091 -3.1423 2.8699 14 1 6.1281 -2.5938 3.6662 15 6 7.5710 -4.0850 3.1652 16 7 7.9031 -4.3159 4.4166 17 14 8.4023 -5.0343 1.7878 18 1 7.6318 -6.2715 1.5040 19 1 8.4530 -4.1914 0.5662 20 1 9.7833 -5.3944 2.1983 21 8 2.2872 -1.0889 -0.0055 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.0477 1.7903 -1.0275 26 1 4.5128 2.5029 0.5134 27 1 5.5819 1.0799 0.5147 28 1 5.6084 -1.0443 -0.5106 29 1 4.5699 -2.4899 -0.5105 30 1 6.5350 -0.2370 1.5823 31 1 4.8502 0.1352 2.0197 32 1 5.8583 -0.8429 3.1131 33 1 4.8144 -4.5017 1.3575 34 1 5.4162 -3.9732 -0.2321 35 1 6.4616 -4.9351 0.8400 36 1 8.5795 -4.9794 4.6244 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618904927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = 9.760397 kcal Electronic energy + Delta-G solvation = -17425.018916 eV Core-core repulsion = 14717.532379 eV Total energy + Delta-G solvation = -2707.486537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.32899 -39.14590 -36.17703 -35.09706 -33.73381 -31.97724 -30.17074 -30.09329 -27.24477 -26.02621 -24.57761 -22.67898 -21.85280 -21.06549 -18.92835 -17.95787 -17.66216 -16.92422 -16.21914 -15.90644 -15.46843 -15.29570 -14.75625 -14.46123 -14.18698 -14.10656 -13.83289 -13.62485 -13.57841 -13.46021 -13.08286 -12.69104 -12.64468 -12.52759 -12.22434 -11.98784 -11.83200 -11.47586 -11.43696 -11.09187 -10.73860 -9.56976 -9.08027 -8.28176 -6.32507 0.43770 1.32078 1.36334 1.46740 1.61185 1.75474 2.32073 3.04978 3.09864 3.21353 3.79659 3.86323 4.06730 4.28939 4.37773 4.46317 4.55248 4.60714 4.64463 4.65224 4.68057 4.71874 4.78747 4.82369 4.92124 4.98446 5.09400 5.12860 5.23800 5.39368 5.47071 5.61130 5.94360 6.23963 6.60062 6.73714 6.75771 7.32093 8.88118 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.006140 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.928021 B = 4559.056498 C = 4729.721772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.181 3.819 3 N -0.511 5.511 4 C -0.020 4.020 5 C -0.078 4.078 6 C -0.044 4.044 7 C 0.131 3.869 8 N -0.541 5.541 9 C 0.039 3.961 10 C 0.186 3.814 11 H 0.004 0.996 12 C -0.146 4.146 13 C -0.510 4.510 14 H 0.040 0.960 15 C 0.013 3.987 16 N -0.948 5.948 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.245 1.245 20 H -0.299 1.299 21 O -0.210 6.210 22 H 0.113 0.887 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 7.983 -13.262 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.026 4.026 3 N -0.242 5.242 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.097 4.097 7 C 0.003 3.997 8 N -0.266 5.266 9 C -0.108 4.108 10 C 0.079 3.921 11 H 0.022 0.978 12 C -0.203 4.203 13 C -0.548 4.548 14 H 0.058 0.942 15 C -0.184 4.184 16 N -0.588 5.588 17 Si 0.776 3.224 18 H -0.192 1.192 19 H -0.169 1.169 20 H -0.227 1.227 21 O -0.098 6.098 22 H 0.131 0.869 23 H 0.120 0.880 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.642 8.273 -12.900 18.657 hybrid contribution 1.476 -1.016 -0.161 1.799 sum -9.166 7.256 -13.061 17.529 Atomic orbital electron populations 1.20513 0.78025 1.06263 1.06204 1.27289 0.98104 0.78145 0.99020 1.70328 1.02016 1.31188 1.20654 1.21863 0.94028 0.92389 1.05720 1.20412 0.91413 0.97801 1.03909 1.23211 0.83635 0.94848 1.08026 1.20550 0.89394 0.98397 0.91351 1.61814 1.41779 1.09516 1.13533 1.22348 0.98055 0.90979 0.99450 1.19561 0.88323 0.89126 0.95070 0.97826 1.22166 1.00604 0.97690 0.99869 1.21183 1.20440 1.21308 0.91855 0.94165 1.25784 0.97131 0.97755 0.97747 1.70036 1.33377 1.35429 1.19987 0.85854 0.76582 0.79799 0.80180 1.19202 1.16867 1.22688 1.84385 1.16997 1.38363 1.70013 0.86869 0.88025 0.87075 0.89249 0.90164 0.90084 0.90159 0.88247 0.94874 0.91555 0.93067 0.92945 0.91407 0.94250 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.51 71.24 0.75 -0.07 16 2 C 0.18 5.03 8.34 88.34 0.74 5.76 16 3 N -0.51 -15.91 11.29 -291.99 -3.30 -19.21 16 4 C -0.02 -0.62 6.17 41.26 0.25 -0.37 16 5 C -0.08 -1.93 9.46 71.24 0.67 -1.25 16 6 C -0.04 -1.45 6.28 24.79 0.16 -1.29 16 7 C 0.13 4.28 5.01 85.56 0.43 4.71 16 8 N -0.54 -22.09 4.61 -906.01 -4.18 -26.27 16 9 C 0.04 1.53 7.69 127.69 0.98 2.52 16 10 C 0.19 8.48 1.65 44.17 0.07 8.55 16 11 H 0.00 0.19 7.20 -2.38 -0.02 0.18 16 12 C -0.15 -5.97 8.47 71.98 0.61 -5.36 16 13 C -0.51 -28.65 8.51 25.60 0.22 -28.43 16 14 H 0.04 2.55 6.64 -2.91 -0.02 2.53 16 15 C 0.01 0.75 5.45 84.66 0.46 1.22 16 16 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 17 Si 0.95 43.69 24.37 68.60 1.67 45.36 16 18 H -0.27 -11.68 6.87 99.48 0.68 -11.00 16 19 H -0.24 -10.25 6.53 99.48 0.65 -9.60 16 20 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 21 O -0.21 -6.88 10.78 -3.78 -0.04 -6.92 16 22 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 2.01 4.74 -2.39 -0.01 2.00 16 28 H 0.08 2.30 7.77 -2.39 -0.02 2.29 16 29 H 0.10 3.08 5.83 -2.39 -0.01 3.07 16 30 H 0.03 1.17 7.33 -2.39 -0.02 1.15 16 31 H 0.07 2.35 5.28 -2.38 -0.01 2.34 16 32 H 0.05 2.31 6.23 -2.39 -0.01 2.30 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.24 6.20 -2.39 -0.01 2.23 16 35 H 0.04 1.64 3.27 -2.39 -0.01 1.63 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -69.91 280.71 0.80 -69.11 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.00 Total: 10.45 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.34 Total: -14.02 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -7.18 Total: -103.98 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.04 Total: -6.92 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.67 Total: 45.36 kcal Total: -69.91 0.80 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.869 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds