Wall clock time and date at job start Sun Mar 29 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30256 * 125.61967 * 2 1 4 4 C 1.34478 * 108.70410 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.16606 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.66724 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.44430 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.47327 * 89.99799 * 7 6 4 9 9 C 1.46894 * 111.00123 * 293.95332 * 8 7 6 10 10 C 1.46902 * 110.99644 * 169.99950 * 8 7 6 11 11 H 1.08996 * 109.47149 * 309.99327 * 10 8 7 12 12 C 1.52997 * 109.47094 * 70.00221 * 10 8 7 13 13 C 1.50706 * 109.46577 * 190.00011 * 10 8 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47347 * 59.99862 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 O 1.33969 * 125.61938 * 180.28770 * 2 1 3 22 22 H 1.08999 * 109.47491 * 90.02737 * 1 2 3 23 23 H 1.09006 * 109.47328 * 210.02627 * 1 2 3 24 24 H 1.09008 * 109.47175 * 330.02317 * 1 2 3 25 25 H 1.08997 * 109.46997 * 269.99488 * 5 4 3 26 26 H 1.08996 * 109.47690 * 30.00128 * 5 4 3 27 27 H 1.09010 * 109.46955 * 149.99874 * 5 4 3 28 28 H 1.08997 * 109.46811 * 329.99794 * 7 6 4 29 29 H 1.09000 * 109.46771 * 209.99936 * 7 6 4 30 30 H 1.09007 * 109.47149 * 296.05065 * 9 8 7 31 31 H 1.09002 * 109.47016 * 56.04488 * 9 8 7 32 32 H 1.08993 * 109.47669 * 176.04501 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 35 35 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 36 36 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7937 -1.5549 0.0029 8 7 5.1905 -1.8396 1.3884 9 6 5.6375 -0.6174 2.0697 10 6 6.2282 -2.8783 1.4358 11 1 5.9158 -3.7318 0.8341 12 6 7.5386 -2.3157 0.8815 13 6 6.4339 -3.3180 2.8626 14 1 5.8523 -2.8702 3.6548 15 6 7.3654 -4.2911 3.1565 16 7 8.0747 -4.8352 2.1919 17 14 7.6199 -4.8366 4.9248 18 1 6.3481 -5.3833 5.4621 19 1 8.6698 -5.8856 4.9730 20 1 8.0445 -3.6739 5.7453 21 8 2.2872 -1.0890 -0.0055 22 1 -0.3634 -0.0005 -1.0276 23 1 -0.3634 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 5.0480 1.7911 -1.0261 26 1 4.5127 2.5024 0.5152 27 1 5.5818 1.0793 0.5155 28 1 5.6083 -1.0444 -0.5107 29 1 4.5698 -2.4900 -0.5104 30 1 6.5352 -0.2371 1.5821 31 1 4.8504 0.1350 2.0197 32 1 5.8585 -0.8430 3.1129 33 1 7.3898 -1.9977 -0.1504 34 1 8.3087 -3.0864 0.9171 35 1 7.8510 -1.4622 1.4833 36 1 8.7303 -5.5195 2.3988 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618904928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:13 Heat of formation + Delta-G solvation = 25.519068 kcal Electronic energy + Delta-G solvation = -17390.974250 eV Core-core repulsion = 14684.171060 eV Total energy + Delta-G solvation = -2706.803190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.06425 -37.46581 -34.87568 -33.38242 -32.18735 -29.64457 -28.92359 -27.90040 -25.29583 -25.16435 -23.08716 -21.43326 -20.38771 -19.23903 -16.66488 -16.51725 -15.95142 -15.12723 -14.60405 -14.33869 -14.11959 -13.51251 -13.20211 -13.09035 -12.98282 -12.67709 -12.55875 -12.36859 -11.84651 -11.56480 -11.18688 -11.03470 -10.77374 -10.73214 -10.64226 -10.58125 -10.25160 -10.08599 -9.88852 -8.98368 -8.41958 -8.26539 -7.27802 -6.04422 -4.08330 1.72253 2.85154 2.95220 3.31507 3.35648 3.39102 4.17554 4.39388 4.92199 5.06729 5.12327 5.27648 5.31140 5.32012 5.49839 5.60162 5.72468 5.83436 5.90296 5.97090 6.12373 6.21801 6.27143 6.42706 6.58296 6.62227 6.74493 6.82677 7.01694 7.34501 7.63700 7.77650 7.98620 8.04239 8.29095 8.49228 8.96704 9.56699 11.02614 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.005911 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.289334 B = 4736.079778 C = 5009.186006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.171 3.829 3 N -0.483 5.483 4 C -0.024 4.024 5 C -0.078 4.078 6 C -0.010 4.010 7 C 0.131 3.869 8 N -0.530 5.530 9 C 0.027 3.973 10 C 0.212 3.788 11 H 0.041 0.959 12 C -0.174 4.174 13 C -0.499 4.499 14 H 0.062 0.938 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 O -0.193 6.193 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.007 0.993 34 H 0.091 0.909 35 H 0.034 0.966 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 8.934 -5.189 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.036 4.036 3 N -0.215 5.215 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.064 4.064 7 C 0.003 3.997 8 N -0.254 5.254 9 C -0.122 4.122 10 C 0.106 3.894 11 H 0.059 0.941 12 C -0.233 4.233 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 O -0.079 6.079 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.211 9.154 -4.963 13.902 hybrid contribution 1.142 -0.724 0.496 1.440 sum -8.069 8.430 -4.466 12.495 Atomic orbital electron populations 1.20153 0.81798 1.04808 1.04135 1.26057 0.96292 0.79071 1.02178 1.70248 1.01775 1.30501 1.18938 1.21383 0.93110 0.92233 1.07688 1.20314 0.92645 0.98027 1.02506 1.23440 0.83537 0.94654 1.04801 1.20470 0.88153 0.97304 0.93801 1.62358 1.43061 1.09506 1.10507 1.22470 0.97281 0.91783 1.00622 1.19370 0.84428 0.88065 0.97522 0.94117 1.22436 1.03851 1.01562 0.95482 1.21029 1.20031 1.20597 0.92148 0.91979 1.24914 0.95743 0.96166 0.97386 1.69865 1.24534 1.27477 1.31531 0.86554 0.77784 0.78252 0.84772 1.20234 1.21360 1.20342 1.84403 1.16783 1.37279 1.69451 0.89450 0.89506 0.88537 0.91329 0.90943 0.89894 0.91901 0.89538 0.95718 0.93341 0.90715 0.97394 0.89078 0.94716 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.49 10.51 36.00 0.38 -0.11 16 2 C 0.17 2.63 8.34 -12.95 -0.11 2.52 16 3 N -0.48 -8.19 11.29 -7.36 -0.08 -8.28 16 4 C -0.02 -0.40 6.17 -82.81 -0.51 -0.91 16 5 C -0.08 -1.08 9.46 36.00 0.34 -0.74 16 6 C -0.01 -0.19 6.28 -35.69 -0.22 -0.41 16 7 C 0.13 2.43 4.76 -4.98 -0.02 2.41 16 8 N -0.53 -11.41 4.69 -237.73 -1.12 -12.53 16 9 C 0.03 0.52 7.26 60.06 0.44 0.96 16 10 C 0.21 5.20 2.31 -68.86 -0.16 5.04 16 11 H 0.04 1.09 7.93 -51.93 -0.41 0.68 16 12 C -0.17 -4.03 8.22 37.16 0.31 -3.73 16 13 C -0.50 -13.50 7.97 -34.44 -0.27 -13.77 16 14 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 O -0.19 -3.45 10.78 5.34 0.06 -3.39 16 22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.16 4.74 -51.92 -0.25 0.92 16 28 H 0.06 1.08 6.71 -51.93 -0.35 0.74 16 29 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 30 H 0.02 0.46 5.40 -51.92 -0.28 0.18 16 31 H 0.05 0.88 5.28 -51.93 -0.27 0.61 16 32 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 33 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 34 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 35 H 0.03 0.77 6.33 -51.93 -0.33 0.45 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -30.15 285.79 -6.12 -36.26 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.95 Total: -0.91 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 0.07 Total: -7.25 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.57 Total: -45.19 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: 0.06 Total: -3.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.15 -6.12 -36.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.781 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds