Wall clock time and date at job start Sun Mar 29 2020 22:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30256 * 125.61967 * 2 1
4 4 C 1.34478 * 108.70410 * 179.97438 * 3 2 1
5 5 C 1.50695 * 126.16606 * 180.02562 * 4 3 2
6 6 C 1.34331 * 107.66724 * 359.97438 * 4 3 2
7 7 C 1.50700 * 126.44430 * 180.02562 * 6 4 3
8 8 N 1.46901 * 109.47327 * 89.99799 * 7 6 4
9 9 C 1.46894 * 111.00123 * 293.95332 * 8 7 6
10 10 C 1.46902 * 110.99644 * 169.99950 * 8 7 6
11 11 H 1.08996 * 109.47149 * 309.99327 * 10 8 7
12 12 C 1.52997 * 109.47094 * 70.00221 * 10 8 7
13 13 C 1.50706 * 109.46577 * 190.00011 * 10 8 7
14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 8
15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 8
16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10
17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10
18 18 H 1.48494 * 109.47347 * 59.99862 * 17 15 13
19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13
20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13
21 21 O 1.33969 * 125.61938 * 180.28770 * 2 1 3
22 22 H 1.08999 * 109.47491 * 90.02737 * 1 2 3
23 23 H 1.09006 * 109.47328 * 210.02627 * 1 2 3
24 24 H 1.09008 * 109.47175 * 330.02317 * 1 2 3
25 25 H 1.08997 * 109.46997 * 269.99488 * 5 4 3
26 26 H 1.08996 * 109.47690 * 30.00128 * 5 4 3
27 27 H 1.09010 * 109.46955 * 149.99874 * 5 4 3
28 28 H 1.08997 * 109.46811 * 329.99794 * 7 6 4
29 29 H 1.09000 * 109.46771 * 209.99936 * 7 6 4
30 30 H 1.09007 * 109.47149 * 296.05065 * 9 8 7
31 31 H 1.09002 * 109.47016 * 56.04488 * 9 8 7
32 32 H 1.08993 * 109.47669 * 176.04501 * 9 8 7
33 33 H 1.09002 * 109.47153 * 299.99508 * 12 10 8
34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 8
35 35 H 1.09004 * 109.47261 * 59.99681 * 12 10 8
36 36 H 0.96996 * 119.99730 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5522 0.6676 0.0006
5 6 4.7570 1.5728 0.0013
6 6 3.5698 -0.6756 0.0015
7 6 4.7937 -1.5549 0.0029
8 7 5.1905 -1.8396 1.3884
9 6 5.6375 -0.6174 2.0697
10 6 6.2282 -2.8783 1.4358
11 1 5.9158 -3.7318 0.8341
12 6 7.5386 -2.3157 0.8815
13 6 6.4339 -3.3180 2.8626
14 1 5.8523 -2.8702 3.6548
15 6 7.3654 -4.2911 3.1565
16 7 8.0747 -4.8352 2.1919
17 14 7.6199 -4.8366 4.9248
18 1 6.3481 -5.3833 5.4621
19 1 8.6698 -5.8856 4.9730
20 1 8.0445 -3.6739 5.7453
21 8 2.2872 -1.0890 -0.0055
22 1 -0.3634 -0.0005 -1.0276
23 1 -0.3634 -0.8898 0.5143
24 1 -0.3634 0.8902 0.5135
25 1 5.0480 1.7911 -1.0261
26 1 4.5127 2.5024 0.5152
27 1 5.5818 1.0793 0.5155
28 1 5.6083 -1.0444 -0.5107
29 1 4.5698 -2.4900 -0.5104
30 1 6.5352 -0.2371 1.5821
31 1 4.8504 0.1350 2.0197
32 1 5.8585 -0.8430 3.1129
33 1 7.3898 -1.9977 -0.1504
34 1 8.3087 -3.0864 0.9171
35 1 7.8510 -1.4622 1.4833
36 1 8.7303 -5.5195 2.3988
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000618904928.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:15:13
Heat of formation + Delta-G solvation = 25.519068 kcal
Electronic energy + Delta-G solvation = -17390.974250 eV
Core-core repulsion = 14684.171060 eV
Total energy + Delta-G solvation = -2706.803190 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 238.142 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.06425 -37.46581 -34.87568 -33.38242 -32.18735 -29.64457 -28.92359 -27.90040
-25.29583 -25.16435 -23.08716 -21.43326 -20.38771 -19.23903 -16.66488 -16.51725
-15.95142 -15.12723 -14.60405 -14.33869 -14.11959 -13.51251 -13.20211 -13.09035
-12.98282 -12.67709 -12.55875 -12.36859 -11.84651 -11.56480 -11.18688 -11.03470
-10.77374 -10.73214 -10.64226 -10.58125 -10.25160 -10.08599 -9.88852 -8.98368
-8.41958 -8.26539 -7.27802 -6.04422 -4.08330 1.72253 2.85154 2.95220
3.31507 3.35648 3.39102 4.17554 4.39388 4.92199 5.06729 5.12327
5.27648 5.31140 5.32012 5.49839 5.60162 5.72468 5.83436 5.90296
5.97090 6.12373 6.21801 6.27143 6.42706 6.58296 6.62227 6.74493
6.82677 7.01694 7.34501 7.63700 7.77650 7.98620 8.04239 8.29095
8.49228 8.96704 9.56699 11.02614
Molecular weight = 238.14amu
Principal moments of inertia in cm(-1)
A = 0.036341 B = 0.005911 C = 0.005588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.289334 B = 4736.079778 C = 5009.186006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 C 0.171 3.829
3 N -0.483 5.483
4 C -0.024 4.024
5 C -0.078 4.078
6 C -0.010 4.010
7 C 0.131 3.869
8 N -0.530 5.530
9 C 0.027 3.973
10 C 0.212 3.788
11 H 0.041 0.959
12 C -0.174 4.174
13 C -0.499 4.499
14 H 0.062 0.938
15 C 0.059 3.941
16 N -0.895 5.895
17 Si 0.898 3.102
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.278 1.278
21 O -0.193 6.193
22 H 0.087 0.913
23 H 0.086 0.914
24 H 0.096 0.904
25 H 0.068 0.932
26 H 0.072 0.928
27 H 0.082 0.918
28 H 0.063 0.937
29 H 0.086 0.914
30 H 0.025 0.975
31 H 0.048 0.952
32 H 0.074 0.926
33 H 0.007 0.993
34 H 0.091 0.909
35 H 0.034 0.966
36 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.698 8.934 -5.189 13.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.036 4.036
3 N -0.215 5.215
4 C -0.144 4.144
5 C -0.135 4.135
6 C -0.064 4.064
7 C 0.003 3.997
8 N -0.254 5.254
9 C -0.122 4.122
10 C 0.106 3.894
11 H 0.059 0.941
12 C -0.233 4.233
13 C -0.538 4.538
14 H 0.080 0.920
15 C -0.142 4.142
16 N -0.534 5.534
17 Si 0.726 3.274
18 H -0.202 1.202
19 H -0.214 1.214
20 H -0.203 1.203
21 O -0.079 6.079
22 H 0.106 0.894
23 H 0.105 0.895
24 H 0.115 0.885
25 H 0.087 0.913
26 H 0.091 0.909
27 H 0.101 0.899
28 H 0.081 0.919
29 H 0.105 0.895
30 H 0.043 0.957
31 H 0.067 0.933
32 H 0.093 0.907
33 H 0.026 0.974
34 H 0.109 0.891
35 H 0.053 0.947
36 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -9.211 9.154 -4.963 13.902
hybrid contribution 1.142 -0.724 0.496 1.440
sum -8.069 8.430 -4.466 12.495
Atomic orbital electron populations
1.20153 0.81798 1.04808 1.04135 1.26057 0.96292 0.79071 1.02178
1.70248 1.01775 1.30501 1.18938 1.21383 0.93110 0.92233 1.07688
1.20314 0.92645 0.98027 1.02506 1.23440 0.83537 0.94654 1.04801
1.20470 0.88153 0.97304 0.93801 1.62358 1.43061 1.09506 1.10507
1.22470 0.97281 0.91783 1.00622 1.19370 0.84428 0.88065 0.97522
0.94117 1.22436 1.03851 1.01562 0.95482 1.21029 1.20031 1.20597
0.92148 0.91979 1.24914 0.95743 0.96166 0.97386 1.69865 1.24534
1.27477 1.31531 0.86554 0.77784 0.78252 0.84772 1.20234 1.21360
1.20342 1.84403 1.16783 1.37279 1.69451 0.89450 0.89506 0.88537
0.91329 0.90943 0.89894 0.91901 0.89538 0.95718 0.93341 0.90715
0.97394 0.89078 0.94716 0.92884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.49 10.51 36.00 0.38 -0.11 16
2 C 0.17 2.63 8.34 -12.95 -0.11 2.52 16
3 N -0.48 -8.19 11.29 -7.36 -0.08 -8.28 16
4 C -0.02 -0.40 6.17 -82.81 -0.51 -0.91 16
5 C -0.08 -1.08 9.46 36.00 0.34 -0.74 16
6 C -0.01 -0.19 6.28 -35.69 -0.22 -0.41 16
7 C 0.13 2.43 4.76 -4.98 -0.02 2.41 16
8 N -0.53 -11.41 4.69 -237.73 -1.12 -12.53 16
9 C 0.03 0.52 7.26 60.06 0.44 0.96 16
10 C 0.21 5.20 2.31 -68.86 -0.16 5.04 16
11 H 0.04 1.09 7.93 -51.93 -0.41 0.68 16
12 C -0.17 -4.03 8.22 37.16 0.31 -3.73 16
13 C -0.50 -13.50 7.97 -34.44 -0.27 -13.77 16
14 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16
15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16
16 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16
17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16
18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
21 O -0.19 -3.45 10.78 5.34 0.06 -3.39 16
22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
23 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
24 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16
25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.08 1.16 4.74 -51.92 -0.25 0.92 16
28 H 0.06 1.08 6.71 -51.93 -0.35 0.74 16
29 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16
30 H 0.02 0.46 5.40 -51.92 -0.28 0.18 16
31 H 0.05 0.88 5.28 -51.93 -0.27 0.61 16
32 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16
33 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16
34 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16
35 H 0.03 0.77 6.33 -51.93 -0.33 0.45 16
36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
LS Contribution 285.79 15.07 4.31 4.31
Total: -1.00 -30.15 285.79 -6.12 -36.26
By element:
Atomic # 1 Polarization: 4.04 SS G_CDS: -4.95 Total: -0.91 kcal
Atomic # 6 Polarization: -7.31 SS G_CDS: 0.07 Total: -7.25 kcal
Atomic # 7 Polarization: -44.62 SS G_CDS: -0.57 Total: -45.19 kcal
Atomic # 8 Polarization: -3.45 SS G_CDS: 0.06 Total: -3.39 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -30.15 -6.12 -36.26 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000618904928.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.781 kcal
(2) G-P(sol) polarization free energy of solvation -30.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds