Wall clock time and date at job start Sun Mar 29 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30256 * 125.61967 * 2 1 4 4 C 1.34478 * 108.70410 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.16606 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.66724 * 359.97438 * 4 3 2 7 7 C 1.50700 * 126.44430 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.47327 * 89.99799 * 7 6 4 9 9 C 1.46894 * 111.00123 * 293.95332 * 8 7 6 10 10 C 1.46902 * 110.99644 * 169.99950 * 8 7 6 11 11 H 1.08996 * 109.47149 * 309.99327 * 10 8 7 12 12 C 1.52997 * 109.47094 * 70.00221 * 10 8 7 13 13 C 1.50706 * 109.46577 * 190.00011 * 10 8 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48494 * 109.47347 * 59.99862 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 O 1.33969 * 125.61938 * 180.28770 * 2 1 3 22 22 H 1.08999 * 109.47491 * 90.02737 * 1 2 3 23 23 H 1.09006 * 109.47328 * 210.02627 * 1 2 3 24 24 H 1.09008 * 109.47175 * 330.02317 * 1 2 3 25 25 H 1.08997 * 109.46997 * 269.99488 * 5 4 3 26 26 H 1.08996 * 109.47690 * 30.00128 * 5 4 3 27 27 H 1.09010 * 109.46955 * 149.99874 * 5 4 3 28 28 H 1.08997 * 109.46811 * 329.99794 * 7 6 4 29 29 H 1.09000 * 109.46771 * 209.99936 * 7 6 4 30 30 H 1.09007 * 109.47149 * 296.05065 * 9 8 7 31 31 H 1.09002 * 109.47016 * 56.04488 * 9 8 7 32 32 H 1.08993 * 109.47669 * 176.04501 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 35 35 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 36 36 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7937 -1.5549 0.0029 8 7 5.1905 -1.8396 1.3884 9 6 5.6375 -0.6174 2.0697 10 6 6.2282 -2.8783 1.4358 11 1 5.9158 -3.7318 0.8341 12 6 7.5386 -2.3157 0.8815 13 6 6.4339 -3.3180 2.8626 14 1 5.8523 -2.8702 3.6548 15 6 7.3654 -4.2911 3.1565 16 7 8.0747 -4.8352 2.1919 17 14 7.6199 -4.8366 4.9248 18 1 6.3481 -5.3833 5.4621 19 1 8.6698 -5.8856 4.9730 20 1 8.0445 -3.6739 5.7453 21 8 2.2872 -1.0890 -0.0055 22 1 -0.3634 -0.0005 -1.0276 23 1 -0.3634 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 5.0480 1.7911 -1.0261 26 1 4.5127 2.5024 0.5152 27 1 5.5818 1.0793 0.5155 28 1 5.6083 -1.0444 -0.5107 29 1 4.5698 -2.4900 -0.5104 30 1 6.5352 -0.2371 1.5821 31 1 4.8504 0.1350 2.0197 32 1 5.8585 -0.8430 3.1129 33 1 7.3898 -1.9977 -0.1504 34 1 8.3087 -3.0864 0.9171 35 1 7.8510 -1.4622 1.4833 36 1 8.7303 -5.5195 2.3988 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618904928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:13 Heat of formation + Delta-G solvation = 3.503122 kcal Electronic energy + Delta-G solvation = -17391.928933 eV Core-core repulsion = 14684.171060 eV Total energy + Delta-G solvation = -2707.757873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.32664 -39.15847 -36.16187 -35.10849 -33.64032 -31.09329 -30.13938 -29.45858 -27.30329 -26.62447 -24.59933 -22.66741 -21.81651 -20.90998 -18.34826 -17.99363 -17.44343 -16.87646 -16.11659 -15.90445 -15.64110 -14.85420 -14.59330 -14.41450 -14.18670 -13.90684 -13.80319 -13.45539 -13.31715 -13.07531 -12.92001 -12.77420 -12.59357 -12.45168 -12.31044 -12.04211 -11.88212 -11.79414 -11.47355 -10.96339 -10.49099 -9.55521 -8.93675 -8.10993 -6.21869 0.44840 1.43642 1.44664 1.52306 1.61763 1.76190 2.43369 3.10651 3.18119 3.38604 3.82879 3.87594 4.10465 4.35340 4.49739 4.52750 4.63042 4.65011 4.67959 4.72047 4.76876 4.81377 4.89931 4.93035 5.07459 5.11502 5.12396 5.23415 5.47189 5.50181 5.69112 5.77494 6.15830 6.41700 6.61736 6.75655 6.89069 7.46987 8.94503 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036341 B = 0.005911 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.289334 B = 4736.079778 C = 5009.186006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.180 3.820 3 N -0.509 5.509 4 C -0.018 4.018 5 C -0.078 4.078 6 C -0.044 4.044 7 C 0.139 3.861 8 N -0.546 5.546 9 C 0.037 3.963 10 C 0.217 3.783 11 H 0.009 0.991 12 C -0.160 4.160 13 C -0.516 4.516 14 H 0.052 0.948 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.271 1.271 21 O -0.213 6.213 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 10.147 -5.130 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.027 4.027 3 N -0.240 5.240 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.097 4.097 7 C 0.011 3.989 8 N -0.270 5.270 9 C -0.111 4.111 10 C 0.110 3.890 11 H 0.027 0.973 12 C -0.219 4.219 13 C -0.555 4.555 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.784 3.216 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.196 1.196 21 O -0.100 6.100 22 H 0.130 0.870 23 H 0.119 0.881 24 H 0.131 0.869 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.063 10.388 -4.907 15.272 hybrid contribution 1.276 -1.053 0.427 1.709 sum -8.787 9.334 -4.480 13.580 Atomic orbital electron populations 1.20515 0.77949 1.06301 1.06181 1.27317 0.98141 0.78119 0.99112 1.70324 1.01924 1.31087 1.20648 1.21832 0.94067 0.92178 1.05744 1.20406 0.91372 0.97812 1.03857 1.23251 0.83521 0.94961 1.07956 1.20351 0.89162 0.97428 0.91986 1.62191 1.42115 1.09887 1.12848 1.22382 0.98206 0.91215 0.99325 1.19111 0.85781 0.88256 0.95818 0.97262 1.22221 1.02119 1.00648 0.96942 1.21282 1.20043 1.20956 0.93194 0.92938 1.25628 0.95527 0.96224 1.01012 1.69985 1.24858 1.27764 1.33161 0.85619 0.77607 0.77979 0.80442 1.20184 1.20853 1.19644 1.84393 1.17078 1.38505 1.70049 0.86954 0.88050 0.86907 0.89447 0.89904 0.90099 0.90450 0.90350 0.94551 0.91952 0.92633 0.95030 0.91778 0.94261 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.85 10.51 71.23 0.75 -0.10 16 2 C 0.18 5.21 8.34 88.34 0.74 5.95 16 3 N -0.51 -16.34 11.29 -291.99 -3.30 -19.64 16 4 C -0.02 -0.59 6.17 41.26 0.25 -0.34 16 5 C -0.08 -1.99 9.46 71.23 0.67 -1.31 16 6 C -0.04 -1.55 6.28 24.79 0.16 -1.39 16 7 C 0.14 5.11 4.76 85.56 0.41 5.52 16 8 N -0.55 -23.56 4.69 -906.05 -4.25 -27.81 16 9 C 0.04 1.41 7.26 127.69 0.93 2.33 16 10 C 0.22 10.81 2.31 44.17 0.10 10.92 16 11 H 0.01 0.52 7.93 -2.39 -0.02 0.51 16 12 C -0.16 -7.39 8.22 71.98 0.59 -6.80 16 13 C -0.52 -28.27 7.97 25.60 0.20 -28.07 16 14 H 0.05 2.91 7.10 -2.91 -0.02 2.89 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -51.89 11.32 21.45 0.24 -51.64 16 17 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 O -0.21 -7.44 10.78 -3.82 -0.04 -7.48 16 22 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.10 1.38 8.14 -2.38 -0.02 1.37 16 24 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.10 4.74 -2.38 -0.01 2.09 16 28 H 0.08 2.58 6.71 -2.39 -0.02 2.56 16 29 H 0.08 2.95 7.93 -2.39 -0.02 2.93 16 30 H 0.04 1.30 5.40 -2.38 -0.01 1.29 16 31 H 0.06 2.20 5.28 -2.39 -0.01 2.19 16 32 H 0.05 2.32 6.86 -2.39 -0.02 2.31 16 33 H 0.03 1.26 6.91 -2.39 -0.02 1.24 16 34 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 35 H 0.04 1.73 6.33 -2.38 -0.02 1.72 16 36 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -64.55 285.79 1.01 -63.54 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.08 Total: 9.52 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.25 Total: -12.03 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -7.31 Total: -99.09 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.04 Total: -7.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.55 1.01 -63.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618904928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.043 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds