Wall clock time and date at job start Sun Mar 29 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47324 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46589 * 30.00180 * 3 2 1 6 6 H 1.48493 * 109.47323 * 149.99844 * 3 2 1 7 7 C 1.37881 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46811 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46955 * 305.00200 * 11 10 9 13 13 N 1.46898 * 109.47006 * 64.99980 * 11 10 9 14 14 C 1.50699 * 109.46866 * 184.99981 * 11 10 9 15 15 O 1.21288 * 119.99899 * 260.00422 * 14 11 10 16 16 N 1.34772 * 120.00286 * 80.00111 * 14 11 10 17 17 C 1.48145 * 127.84252 * 180.02562 * 16 14 11 18 18 C 1.54391 * 104.62188 * 140.41394 * 17 16 14 19 19 H 1.08996 * 117.61587 * 244.78691 * 18 17 16 20 20 C 1.53002 * 118.12279 * 87.18694 * 18 17 16 21 21 C 1.53001 * 60.55924 * 268.46308 * 20 18 17 22 22 H 1.08994 * 119.53495 * 248.23407 * 21 20 18 23 23 C 1.48153 * 127.83632 * 359.68145 * 16 14 11 24 24 H 0.96993 * 119.99974 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47208 * 59.99957 * 9 7 2 26 26 H 1.09001 * 109.47093 * 300.00264 * 9 7 2 27 27 H 1.08992 * 109.47188 * 60.00163 * 10 9 7 28 28 H 1.08997 * 109.46828 * 299.99882 * 10 9 7 29 29 H 1.00908 * 111.00028 * 59.99837 * 13 11 10 30 30 H 1.00899 * 110.99915 * 183.95106 * 13 11 10 31 31 H 1.08998 * 110.40536 * 259.20057 * 17 16 14 32 32 H 1.09005 * 110.40816 * 21.62890 * 17 16 14 33 33 H 1.08999 * 117.43803 * 16.11596 * 20 18 17 34 34 H 1.08995 * 117.44285 * 160.80958 * 20 18 17 35 35 H 1.09000 * 110.40325 * 338.36717 * 23 16 14 36 36 H 1.08991 * 110.40970 * 100.79758 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 1 0.7877 -5.0071 0.8395 13 7 0.7290 -5.1183 -1.2576 14 6 2.4547 -6.1299 0.1221 15 8 2.7870 -6.7532 -0.8639 16 7 2.9571 -6.4592 1.3285 17 6 3.9181 -7.5403 1.6486 18 6 4.8580 -6.9253 2.7078 19 1 5.9059 -6.7939 2.4381 20 6 4.4460 -7.0179 4.1784 21 6 4.0374 -5.7923 3.3586 22 1 4.4779 -4.8219 3.5870 23 6 2.6789 -5.8177 2.6347 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5564 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6039 -0.8909 29 1 1.3492 -5.1024 -2.0534 30 1 0.1646 -5.9547 -1.2556 31 1 3.3954 -8.4039 2.0598 32 1 4.4813 -7.8237 0.7594 33 1 3.6646 -7.7325 4.4370 34 1 5.2258 -6.8837 4.9279 35 1 2.3084 -4.8031 2.4885 36 1 1.9596 -6.4078 3.2024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691593821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:25 Heat of formation + Delta-G solvation = -9.800300 kcal Electronic energy + Delta-G solvation = -17099.180082 eV Core-core repulsion = 14390.845330 eV Total energy + Delta-G solvation = -2708.334752 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46662 -38.51536 -35.20704 -33.58792 -32.79079 -30.11371 -28.78439 -27.09098 -25.57790 -23.23611 -21.58037 -20.43240 -20.22851 -19.04944 -17.32554 -16.29343 -15.91559 -15.52494 -15.30657 -15.20379 -14.40094 -13.81949 -13.54703 -13.44354 -12.71416 -12.42675 -12.20773 -12.04701 -11.81324 -11.68996 -11.51535 -10.89571 -10.70235 -10.54679 -10.39692 -10.29640 -9.96815 -9.78444 -9.36664 -9.00419 -8.74803 -8.35496 -8.20494 -5.93904 -3.96055 2.73913 3.01558 3.31187 3.34799 3.41036 3.43782 4.33605 4.42372 4.49914 4.64056 4.84069 4.92684 5.01635 5.08388 5.32016 5.41620 5.45733 5.51449 5.59213 5.66841 5.74502 5.83988 5.90652 5.97069 6.15187 6.45482 6.66785 7.08420 7.40331 7.60918 7.75803 7.79637 7.95807 8.13046 8.26208 8.48426 9.11844 9.67100 11.17050 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.006016 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.897063 B = 4652.832934 C = 5368.208297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.082 3.918 12 H 0.097 0.903 13 N -0.806 5.806 14 C 0.505 3.495 15 O -0.555 6.555 16 N -0.622 5.622 17 C 0.128 3.872 18 C -0.180 4.180 19 H 0.119 0.881 20 C -0.138 4.138 21 C -0.174 4.174 22 H 0.125 0.875 23 C 0.122 3.878 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.013 0.987 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.348 0.652 30 H 0.334 0.666 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -14.297 8.039 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.033 4.033 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.294 3.706 15 O -0.433 6.433 16 N -0.357 5.357 17 C 0.005 3.995 18 C -0.199 4.199 19 H 0.137 0.863 20 C -0.175 4.175 21 C -0.193 4.193 22 H 0.143 0.857 23 C -0.001 4.001 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.924 -13.771 7.554 16.787 hybrid contribution 1.191 0.077 -0.015 1.194 sum 7.115 -13.694 7.539 17.175 Atomic orbital electron populations 1.69972 1.05946 1.26418 1.50839 1.24985 0.94794 0.99023 0.95469 0.86656 0.79808 0.83781 0.78093 1.20709 1.21270 1.20033 1.21270 0.92879 0.91303 1.50598 0.93021 1.19017 0.93522 0.89783 0.98211 1.21670 0.98865 0.92083 1.00691 1.21822 0.93390 0.93121 0.94999 0.88497 1.59028 1.26855 1.44250 1.03264 1.22537 0.81955 0.85484 0.80670 1.90648 1.61631 1.54788 1.36187 1.49474 1.45404 1.33540 1.07235 1.21719 0.90292 0.89936 0.97550 1.23674 0.99540 1.03490 0.93238 0.86280 1.23037 1.02861 0.99022 0.92577 1.23619 0.96776 0.95019 1.03929 0.85748 1.21852 0.95118 1.00128 0.82954 0.93090 0.94653 0.96880 0.92796 0.92874 0.83808 0.85440 0.91219 0.89796 0.88690 0.87800 0.88333 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 10 C -0.09 -1.96 4.63 -26.73 -0.12 -2.08 16 11 C 0.08 1.45 2.40 -68.86 -0.17 1.28 16 12 H 0.10 1.61 7.61 -51.93 -0.40 1.22 16 13 N -0.81 -14.07 8.44 -5.65 -0.05 -14.11 16 14 C 0.50 8.61 7.15 -10.99 -0.08 8.53 16 15 O -0.55 -10.91 16.52 5.55 0.09 -10.82 16 16 N -0.62 -8.78 3.32 -169.57 -0.56 -9.34 16 17 C 0.13 1.51 6.86 -2.41 -0.02 1.50 16 18 C -0.18 -1.79 7.13 -89.21 -0.64 -2.42 16 19 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.14 -1.09 10.07 -26.73 -0.27 -1.36 16 21 C -0.17 -1.78 7.11 -89.44 -0.64 -2.42 16 22 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 23 C 0.12 1.44 6.47 -2.63 -0.02 1.42 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.04 0.98 7.75 -51.92 -0.40 0.58 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 1.06 7.02 -51.93 -0.36 0.69 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 30 H 0.33 5.06 9.06 -39.29 -0.36 4.71 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.27 6.09 -51.93 -0.32 0.95 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -32.41 298.86 -8.29 -40.70 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.50 Total: 6.90 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.49 Total: -8.39 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.13 Total: -49.62 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.41 -8.29 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds