Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47324 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46589 * 30.00180 * 3 2 1 6 6 H 1.48493 * 109.47323 * 149.99844 * 3 2 1 7 7 C 1.37881 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46811 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46955 * 305.00200 * 11 10 9 13 13 N 1.46898 * 109.47006 * 64.99980 * 11 10 9 14 14 C 1.50699 * 109.46866 * 184.99981 * 11 10 9 15 15 O 1.21288 * 119.99899 * 260.00422 * 14 11 10 16 16 N 1.34772 * 120.00286 * 80.00111 * 14 11 10 17 17 C 1.48145 * 127.84252 * 180.02562 * 16 14 11 18 18 C 1.54391 * 104.62188 * 140.41394 * 17 16 14 19 19 H 1.08996 * 117.61587 * 244.78691 * 18 17 16 20 20 C 1.53002 * 118.12279 * 87.18694 * 18 17 16 21 21 C 1.53001 * 60.55924 * 268.46308 * 20 18 17 22 22 H 1.08994 * 119.53495 * 248.23407 * 21 20 18 23 23 C 1.48153 * 127.83632 * 359.68145 * 16 14 11 24 24 H 0.96993 * 119.99974 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47208 * 59.99957 * 9 7 2 26 26 H 1.09001 * 109.47093 * 300.00264 * 9 7 2 27 27 H 1.08992 * 109.47188 * 60.00163 * 10 9 7 28 28 H 1.08997 * 109.46828 * 299.99882 * 10 9 7 29 29 H 1.00908 * 111.00028 * 59.99837 * 13 11 10 30 30 H 1.00899 * 110.99915 * 183.95106 * 13 11 10 31 31 H 1.08998 * 110.40536 * 259.20057 * 17 16 14 32 32 H 1.09005 * 110.40816 * 21.62890 * 17 16 14 33 33 H 1.08999 * 117.43803 * 16.11596 * 20 18 17 34 34 H 1.08995 * 117.44285 * 160.80958 * 20 18 17 35 35 H 1.09000 * 110.40325 * 338.36717 * 23 16 14 36 36 H 1.08991 * 110.40970 * 100.79758 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 1 0.7877 -5.0071 0.8395 13 7 0.7290 -5.1183 -1.2576 14 6 2.4547 -6.1299 0.1221 15 8 2.7870 -6.7532 -0.8639 16 7 2.9571 -6.4592 1.3285 17 6 3.9181 -7.5403 1.6486 18 6 4.8580 -6.9253 2.7078 19 1 5.9059 -6.7939 2.4381 20 6 4.4460 -7.0179 4.1784 21 6 4.0374 -5.7923 3.3586 22 1 4.4779 -4.8219 3.5870 23 6 2.6789 -5.8177 2.6347 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5564 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6039 -0.8909 29 1 1.3492 -5.1024 -2.0534 30 1 0.1646 -5.9547 -1.2556 31 1 3.3954 -8.4039 2.0598 32 1 4.4813 -7.8237 0.7594 33 1 3.6646 -7.7325 4.4370 34 1 5.2258 -6.8837 4.9279 35 1 2.3084 -4.8031 2.4885 36 1 1.9596 -6.4078 3.2024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691593821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = -32.238932 kcal Electronic energy + Delta-G solvation = -17100.153094 eV Core-core repulsion = 14390.845330 eV Total energy + Delta-G solvation = -2709.307765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56661 -39.66160 -36.85256 -34.85482 -34.59584 -31.96875 -29.77844 -28.46301 -27.12949 -24.87921 -22.48661 -22.07097 -21.16959 -20.30588 -18.66833 -18.26473 -17.10285 -16.96362 -16.42890 -16.38685 -16.27741 -15.27906 -14.69809 -14.64217 -14.31322 -13.86917 -13.62080 -13.43194 -13.33252 -12.81514 -12.61878 -12.55310 -12.47762 -12.26478 -11.79773 -11.69703 -11.30811 -11.10728 -11.08810 -10.86159 -10.49705 -9.87065 -9.67811 -8.14322 -6.24785 1.39238 1.42204 1.43111 1.53511 1.87867 2.44213 2.56118 3.18717 3.41978 3.53918 3.59747 3.73001 3.94635 4.04159 4.10788 4.24786 4.27038 4.46052 4.62073 4.68500 4.76881 4.86331 4.89746 5.03820 5.09350 5.13980 5.22226 5.27413 5.55754 5.81734 5.96694 6.04606 6.29083 6.39049 6.46556 6.92984 6.96229 7.43342 8.97028 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.006016 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.897063 B = 4652.832934 C = 5368.208297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.079 4.079 11 C 0.091 3.909 12 H 0.107 0.893 13 N -0.817 5.817 14 C 0.505 3.495 15 O -0.586 6.586 16 N -0.621 5.621 17 C 0.123 3.877 18 C -0.185 4.185 19 H 0.123 0.877 20 C -0.107 4.107 21 C -0.189 4.189 22 H 0.123 0.877 23 C 0.116 3.884 24 H 0.263 0.737 25 H 0.006 0.994 26 H -0.005 1.005 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.345 0.655 30 H 0.347 0.653 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -14.714 9.736 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.117 4.117 11 C -0.025 4.025 12 H 0.125 0.875 13 N -0.346 5.346 14 C 0.294 3.706 15 O -0.467 6.467 16 N -0.354 5.354 17 C 0.001 3.999 18 C -0.205 4.205 19 H 0.141 0.859 20 C -0.144 4.144 21 C -0.208 4.208 22 H 0.141 0.859 23 C -0.005 4.005 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.014 0.986 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.147 -14.208 9.296 18.422 hybrid contribution 0.800 0.174 -0.501 0.960 sum 7.948 -14.034 8.795 18.370 Atomic orbital electron populations 1.70099 1.07622 1.27569 1.51625 1.25884 0.95688 1.02965 0.94887 0.85541 0.78769 0.78960 0.78321 1.20196 1.20587 1.18821 1.21695 0.93268 0.92690 1.50566 0.92777 1.18811 0.93749 0.91169 0.95832 1.21372 0.97740 0.92113 1.00482 1.21588 0.93504 0.91954 0.95432 0.87518 1.59006 1.27106 1.45270 1.03171 1.22157 0.81955 0.85232 0.81304 1.90629 1.62744 1.55872 1.37473 1.49544 1.44847 1.33895 1.07132 1.21901 0.90300 0.89959 0.97738 1.23673 0.99207 1.03340 0.94230 0.85873 1.23168 1.03027 0.96878 0.91290 1.23616 0.95743 0.95918 1.05498 0.85926 1.22033 0.96790 0.99552 0.82145 0.92864 0.97567 0.98615 0.91812 0.94156 0.84104 0.83968 0.89224 0.91379 0.87292 0.85709 0.89917 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.04 2.19 4.86 29.85 0.15 2.33 16 10 C -0.08 -3.30 4.63 30.60 0.14 -3.16 16 11 C 0.09 3.21 2.40 44.17 0.11 3.32 16 12 H 0.11 3.53 7.61 -2.39 -0.02 3.51 16 13 N -0.82 -28.97 8.44 -171.80 -1.45 -30.42 16 14 C 0.51 17.13 7.15 87.66 0.63 17.75 16 15 O -0.59 -23.18 16.52 -3.05 -0.05 -23.23 16 16 N -0.62 -16.86 3.32 -808.79 -2.69 -19.54 16 17 C 0.12 2.70 6.86 86.54 0.59 3.30 16 18 C -0.19 -3.22 7.13 -9.88 -0.07 -3.29 16 19 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 20 C -0.11 -1.27 10.07 30.60 0.31 -0.97 16 21 C -0.19 -3.42 7.11 -10.03 -0.07 -3.49 16 22 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 23 C 0.12 2.54 6.47 86.38 0.56 3.10 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H 0.01 0.34 7.75 -2.38 -0.02 0.33 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.06 2.51 7.02 -2.39 -0.02 2.50 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.35 12.53 8.58 -89.69 -0.77 11.76 16 30 H 0.35 10.57 9.06 -89.69 -0.81 9.76 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.72 7.88 -2.38 -0.02 1.70 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 2.07 6.09 -2.39 -0.01 2.06 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -69.82 298.86 0.66 -69.15 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.50 Total: 25.26 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 3.03 Total: -11.32 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.85 Total: -106.38 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.82 0.66 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691593821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds