Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47026 * 2 1 4 4 C 1.53004 * 109.47413 * 59.99814 * 3 2 1 5 5 C 1.53003 * 109.46854 * 299.99630 * 3 2 1 6 6 C 1.50700 * 109.47257 * 180.02562 * 3 2 1 7 7 N 1.29954 * 126.28654 * 359.97438 * 6 3 2 8 8 O 1.21293 * 110.25286 * 180.02562 * 7 6 3 9 9 C 1.33642 * 109.81058 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55339 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47431 * 269.97717 * 10 9 8 12 12 C 1.50698 * 109.47431 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99802 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00006 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46729 * 89.99606 * 16 14 12 18 18 H 1.48495 * 109.47060 * 209.99596 * 16 14 12 19 19 H 1.48501 * 109.46904 * 330.00072 * 16 14 12 20 20 N 1.31130 * 106.90015 * 0.02562 * 9 8 7 21 21 H 1.08998 * 109.47211 * 60.00049 * 1 2 3 22 22 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47328 * 300.00146 * 1 2 3 24 24 H 1.08999 * 109.47328 * 239.99854 * 2 1 3 25 25 H 1.09001 * 109.46834 * 119.99283 * 2 1 3 26 26 H 1.09004 * 109.46924 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47101 * 299.99931 * 4 3 2 28 28 H 1.08998 * 109.46820 * 60.00051 * 4 3 2 29 29 H 1.08999 * 109.47336 * 300.00045 * 5 3 2 30 30 H 1.08998 * 109.46721 * 60.00651 * 5 3 2 31 31 H 1.09004 * 109.46788 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.46935 * 29.97313 * 10 9 8 33 33 H 1.08997 * 109.47416 * 149.97136 * 10 9 8 34 34 H 1.09000 * 109.46731 * 299.99720 * 11 10 9 35 35 H 1.08997 * 109.47295 * 59.99345 * 11 10 9 36 36 H 0.96995 * 119.99350 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5470 1.4426 -0.0006 7 7 4.3161 0.3951 -0.0006 8 8 5.4818 0.7301 -0.0007 9 6 5.5698 2.0637 -0.0013 10 6 6.8368 2.8795 -0.0022 11 6 7.2659 3.1568 1.4400 12 6 8.5333 3.9721 1.4392 13 1 8.9876 4.2631 0.5036 14 6 9.1129 4.3467 2.6329 15 7 8.5594 3.9927 3.7722 16 14 10.6843 5.3567 2.6318 17 1 10.3435 6.8021 2.6296 18 1 11.4788 5.0373 3.8450 19 1 11.4795 5.0337 1.4200 20 7 4.3430 2.5266 -0.0011 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.8929 3.1917 1.2489 27 1 0.4400 2.1639 1.2492 28 1 1.8933 1.6500 2.1392 29 1 1.8933 1.6498 -2.1393 30 1 0.4400 2.1637 -1.2493 31 1 1.8937 3.1912 -1.2495 32 1 7.6241 2.3275 -0.5157 33 1 6.6605 3.8241 -0.5168 34 1 6.4787 3.7088 1.9535 35 1 7.4423 2.2123 1.9546 36 1 8.9669 4.2565 4.6119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710813607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = 33.474117 kcal Electronic energy + Delta-G solvation = -16871.681099 eV Core-core repulsion = 14165.222866 eV Total energy + Delta-G solvation = -2706.458233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.06473 -38.12110 -35.19027 -34.03361 -32.33159 -30.22400 -30.09573 -27.37937 -25.92428 -25.11121 -22.91873 -22.52648 -20.96418 -18.83083 -17.56953 -16.90236 -16.32550 -15.48992 -14.79254 -14.54756 -14.28168 -13.86198 -13.45396 -13.30741 -12.44530 -12.41419 -12.23390 -12.00251 -11.92769 -11.56952 -11.41283 -11.19201 -11.09701 -10.99735 -10.87991 -10.76618 -10.54705 -10.39105 -10.11098 -9.97104 -9.32207 -9.13495 -8.44877 -6.09250 -4.13967 1.67281 2.71186 3.28971 3.35005 3.37434 3.43236 3.88120 4.31794 4.40389 4.79683 4.87774 4.93278 5.20293 5.27388 5.28188 5.46206 5.60895 5.63246 5.70114 5.80780 5.83192 5.91328 5.93061 6.04130 6.08942 6.18305 6.25612 6.28012 6.37007 6.51055 6.64870 7.49755 7.57058 7.86422 8.22006 8.67051 8.91367 9.50955 11.02041 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049877 B = 0.004570 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.247520 B = 6125.168761 C = 6244.737388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.031 3.969 4 C -0.140 4.140 5 C -0.138 4.138 6 C 0.174 3.826 7 N -0.398 5.398 8 O 0.064 5.936 9 C 0.211 3.789 10 C -0.028 4.028 11 C 0.028 3.972 12 C -0.526 4.526 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 N -0.493 5.493 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 -5.091 -7.959 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C 0.029 3.971 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.099 4.099 7 N -0.109 5.109 8 O 0.009 5.991 9 C -0.008 4.008 10 C -0.067 4.067 11 C -0.010 4.010 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 N -0.226 5.226 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.007 -5.593 -7.771 16.967 hybrid contribution 1.110 0.556 0.214 1.260 sum -12.898 -5.037 -7.557 15.774 Atomic orbital electron populations 1.21893 0.95185 1.01777 1.02211 1.21501 0.95992 0.94320 1.03040 1.18902 0.83096 0.97210 0.97854 1.21899 1.00999 1.01197 0.95689 1.21884 1.01098 1.01023 0.95583 1.25663 0.99412 0.84145 1.00725 1.74527 0.89555 1.24182 1.22669 1.85264 1.22048 1.25568 1.66210 1.29618 0.97674 0.81499 0.92019 1.20727 0.85544 0.96140 1.04290 1.19151 0.97005 0.97797 0.87071 1.21076 1.08537 1.34015 0.92771 0.92039 1.25014 0.97675 0.96040 0.95502 1.69972 1.39925 1.45682 0.97406 0.86507 0.82980 0.80377 0.77641 1.20550 1.21178 1.19690 1.71857 0.99755 1.28997 1.22005 0.92264 0.92597 0.92169 0.91523 0.91396 0.91274 0.91267 0.92471 0.92721 0.91243 0.91380 0.89196 0.88300 0.95548 0.95843 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.21 37.16 0.34 -1.00 16 2 C -0.11 -1.30 4.49 -26.73 -0.12 -1.42 16 3 C 0.03 0.42 0.77 -155.66 -0.12 0.30 16 4 C -0.14 -1.75 8.10 37.16 0.30 -1.45 16 5 C -0.14 -1.58 8.10 37.16 0.30 -1.28 16 6 C 0.17 3.04 6.40 -156.37 -1.00 2.04 16 7 N -0.40 -7.42 11.47 30.90 0.35 -7.07 16 8 O 0.06 1.24 11.31 18.11 0.20 1.45 16 9 C 0.21 4.11 7.77 -13.06 -0.10 4.01 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.03 0.70 4.95 -27.88 -0.14 0.56 16 12 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.49 -9.52 11.55 -9.87 -0.11 -9.63 16 21 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -29.83 299.95 -5.95 -35.78 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.53 Total: -3.65 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.11 Total: -11.82 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.98 Total: -42.19 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.83 -5.95 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710813607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.255 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds