Wall clock time and date at job start Sun Mar 29 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47026 * 2 1 4 4 C 1.53004 * 109.47413 * 59.99814 * 3 2 1 5 5 C 1.53003 * 109.46854 * 299.99630 * 3 2 1 6 6 C 1.50700 * 109.47257 * 180.02562 * 3 2 1 7 7 N 1.29954 * 126.28654 * 359.97438 * 6 3 2 8 8 O 1.21293 * 110.25286 * 180.02562 * 7 6 3 9 9 C 1.33642 * 109.81058 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55339 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47431 * 269.97717 * 10 9 8 12 12 C 1.50698 * 109.47431 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99802 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00006 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46729 * 89.99606 * 16 14 12 18 18 H 1.48495 * 109.47060 * 209.99596 * 16 14 12 19 19 H 1.48501 * 109.46904 * 330.00072 * 16 14 12 20 20 N 1.31130 * 106.90015 * 0.02562 * 9 8 7 21 21 H 1.08998 * 109.47211 * 60.00049 * 1 2 3 22 22 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47328 * 300.00146 * 1 2 3 24 24 H 1.08999 * 109.47328 * 239.99854 * 2 1 3 25 25 H 1.09001 * 109.46834 * 119.99283 * 2 1 3 26 26 H 1.09004 * 109.46924 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47101 * 299.99931 * 4 3 2 28 28 H 1.08998 * 109.46820 * 60.00051 * 4 3 2 29 29 H 1.08999 * 109.47336 * 300.00045 * 5 3 2 30 30 H 1.08998 * 109.46721 * 60.00651 * 5 3 2 31 31 H 1.09004 * 109.46788 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.46935 * 29.97313 * 10 9 8 33 33 H 1.08997 * 109.47416 * 149.97136 * 10 9 8 34 34 H 1.09000 * 109.46731 * 299.99720 * 11 10 9 35 35 H 1.08997 * 109.47295 * 59.99345 * 11 10 9 36 36 H 0.96995 * 119.99350 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5470 1.4426 -0.0006 7 7 4.3161 0.3951 -0.0006 8 8 5.4818 0.7301 -0.0007 9 6 5.5698 2.0637 -0.0013 10 6 6.8368 2.8795 -0.0022 11 6 7.2659 3.1568 1.4400 12 6 8.5333 3.9721 1.4392 13 1 8.9876 4.2631 0.5036 14 6 9.1129 4.3467 2.6329 15 7 8.5594 3.9927 3.7722 16 14 10.6843 5.3567 2.6318 17 1 10.3435 6.8021 2.6296 18 1 11.4788 5.0373 3.8450 19 1 11.4795 5.0337 1.4200 20 7 4.3430 2.5266 -0.0011 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.8929 3.1917 1.2489 27 1 0.4400 2.1639 1.2492 28 1 1.8933 1.6500 2.1392 29 1 1.8933 1.6498 -2.1393 30 1 0.4400 2.1637 -1.2493 31 1 1.8937 3.1912 -1.2495 32 1 7.6241 2.3275 -0.5157 33 1 6.6605 3.8241 -0.5168 34 1 6.4787 3.7088 1.9535 35 1 7.4423 2.2123 1.9546 36 1 8.9669 4.2565 4.6119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710813607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:28 Heat of formation + Delta-G solvation = 14.900939 kcal Electronic energy + Delta-G solvation = -16872.486492 eV Core-core repulsion = 14165.222866 eV Total energy + Delta-G solvation = -2707.263626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.54581 -39.19666 -36.79241 -35.72111 -34.13267 -31.85656 -31.08718 -28.33879 -27.77917 -26.32080 -24.36433 -24.00903 -22.60478 -20.01091 -19.10613 -18.57540 -18.11982 -16.62972 -16.49641 -15.73559 -15.69528 -15.10991 -15.02050 -14.35486 -14.31345 -13.61820 -13.42167 -13.27641 -13.05176 -12.93966 -12.82220 -12.70273 -12.51257 -12.21640 -12.16329 -12.14625 -11.96197 -11.86037 -11.52137 -11.51810 -11.34548 -10.74720 -10.57231 -8.20836 -6.33167 0.15109 1.25588 1.46072 1.47034 1.58254 1.89146 2.43450 2.61926 3.03041 3.14609 3.72839 3.82152 3.89782 4.20779 4.37715 4.40791 4.51585 4.52509 4.60044 4.65554 4.73130 4.84967 4.86804 4.93646 4.96350 5.05056 5.05411 5.16667 5.18337 5.35599 5.42169 5.49391 5.52786 5.76855 6.12446 6.82506 7.17335 7.37201 8.91726 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049877 B = 0.004570 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.247520 B = 6125.168761 C = 6244.737388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.024 3.976 4 C -0.137 4.137 5 C -0.132 4.132 6 C 0.176 3.824 7 N -0.410 5.410 8 O 0.053 5.947 9 C 0.204 3.796 10 C -0.013 4.013 11 C 0.035 3.965 12 C -0.539 4.539 13 H 0.079 0.921 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.256 1.256 20 N -0.506 5.506 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.113 0.887 34 H -0.007 1.007 35 H -0.005 1.005 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -4.673 -9.298 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.023 3.977 4 C -0.194 4.194 5 C -0.190 4.190 6 C -0.097 4.097 7 N -0.123 5.123 8 O 0.001 5.999 9 C -0.016 4.016 10 C -0.052 4.052 11 C -0.004 4.004 12 C -0.577 4.577 13 H 0.097 0.903 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.180 1.180 20 N -0.240 5.240 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.710 -5.183 -9.133 18.074 hybrid contribution 1.261 0.388 0.647 1.469 sum -13.449 -4.795 -8.487 16.610 Atomic orbital electron populations 1.21877 0.92379 1.02928 1.03312 1.21475 0.98327 0.92745 1.01893 1.19274 0.80416 0.98816 0.99235 1.21904 1.03165 0.99766 0.94609 1.21876 1.03072 0.99812 0.94262 1.26526 1.01217 0.83173 0.98833 1.74523 0.89430 1.24689 1.23627 1.85244 1.22617 1.25460 1.66562 1.29568 0.97827 0.81719 0.92454 1.20494 0.86368 0.97371 1.00959 1.18937 0.95785 0.95706 0.89953 1.21570 1.08973 1.33651 0.93497 0.90328 1.26015 1.01375 0.97309 0.95106 1.70123 1.41887 1.47367 0.98189 0.85355 0.78537 0.78579 0.78030 1.19898 1.21281 1.17975 1.71874 1.00016 1.29906 1.22189 0.90780 0.91561 0.91331 0.92233 0.93055 0.92827 0.87744 0.93941 0.92902 0.87979 0.92558 0.86790 0.86837 0.98876 0.98612 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.21 71.98 0.66 -1.48 16 2 C -0.11 -2.35 4.49 30.59 0.14 -2.21 16 3 C 0.02 0.63 0.77 -52.93 -0.04 0.58 16 4 C -0.14 -3.26 8.10 71.98 0.58 -2.68 16 5 C -0.13 -2.76 8.10 71.98 0.58 -2.18 16 6 C 0.18 6.15 6.40 138.46 0.89 7.04 16 7 N -0.41 -15.41 11.47 -60.32 -0.69 -16.10 16 8 O 0.05 2.10 11.31 74.85 0.85 2.94 16 9 C 0.20 8.01 7.77 88.38 0.69 8.69 16 10 C -0.01 -0.51 5.78 29.85 0.17 -0.34 16 11 C 0.03 1.76 4.95 29.85 0.15 1.91 16 12 C -0.54 -28.91 9.11 25.60 0.23 -28.68 16 13 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 14 C 0.00 0.00 5.46 84.65 0.46 0.46 16 15 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 16 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 N -0.51 -19.68 11.55 -303.19 -3.50 -23.18 16 21 H 0.07 0.87 6.43 -2.39 -0.02 0.85 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.89 6.43 -2.39 -0.02 0.87 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.73 6.43 -2.39 -0.02 1.71 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.45 6.43 -2.39 -0.02 1.44 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -65.23 299.95 4.53 -60.70 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.05 Total: 5.83 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.52 Total: -18.88 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.91 Total: -95.30 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.85 Total: 2.94 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.23 4.53 -60.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710813607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.597 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds