Wall clock time and date at job start Sun Mar 29 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47298 * 2 1 4 4 N 1.30503 * 125.64757 * 270.16998 * 3 2 1 5 5 C 1.34132 * 109.25579 * 180.29064 * 4 3 2 6 6 C 1.50695 * 125.98946 * 179.72401 * 5 4 3 7 7 C 1.34669 * 108.01768 * 359.73289 * 5 4 3 8 8 N 1.35042 * 125.65478 * 90.00104 * 3 2 1 9 9 C 1.46500 * 126.39313 * 359.97438 * 8 3 2 10 10 C 1.52997 * 109.47473 * 84.71557 * 9 8 3 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 8 12 12 C 1.42902 * 114.00186 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47205 * 179.97438 * 12 11 10 14 14 H 1.08008 * 120.00105 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00129 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99722 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00218 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47224 * 59.99769 * 17 15 13 19 19 H 1.48500 * 109.47098 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47074 * 299.99700 * 17 15 13 21 21 H 1.08998 * 109.47047 * 300.00344 * 1 2 3 22 22 H 1.08999 * 109.47028 * 59.99954 * 1 2 3 23 23 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47047 * 239.99656 * 2 1 3 25 25 H 1.08999 * 109.47028 * 120.00046 * 2 1 3 26 26 H 1.08999 * 109.47772 * 270.00265 * 6 5 4 27 27 H 1.08999 * 109.46935 * 30.01019 * 6 5 4 28 28 H 1.09003 * 109.47190 * 150.00354 * 6 5 4 29 29 H 1.07997 * 126.59117 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.47129 * 324.71300 * 9 8 3 31 31 H 1.08998 * 109.46845 * 204.72107 * 9 8 3 32 32 H 1.09002 * 109.47153 * 59.99757 * 10 9 8 33 33 H 1.09001 * 109.46832 * 299.99948 * 10 9 8 34 34 H 1.09001 * 109.46918 * 299.99649 * 12 11 10 35 35 H 1.08999 * 109.46857 * 59.99535 * 12 11 10 36 36 H 0.96998 * 119.99585 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1389 -1.0605 5 6 2.7190 3.3496 -0.6820 6 6 3.1219 4.4731 -1.6019 7 6 2.7338 3.3849 0.6642 8 7 2.2948 2.1629 1.0973 9 6 2.1438 1.7374 2.4910 10 6 3.4030 0.9907 2.9356 11 8 3.2554 0.5752 4.2948 12 6 4.3830 -0.1348 4.8113 13 6 4.1198 -0.5219 6.2437 14 1 3.1851 -0.2522 6.7130 15 6 5.0726 -1.2193 6.9556 16 7 6.2109 -1.5472 6.3843 17 14 4.7467 -1.6984 8.7314 18 1 3.5433 -2.5661 8.7972 19 1 5.9184 -2.4363 9.2680 20 1 4.5192 -0.4743 9.5407 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.1861 4.3962 -1.8251 27 1 2.5507 4.4071 -2.5278 28 1 2.9204 5.4289 -1.1180 29 1 3.0346 4.2173 1.2830 30 1 1.2804 1.0776 2.5779 31 1 1.9975 2.6124 3.1242 32 1 4.2663 1.6505 2.8486 33 1 3.5492 0.1157 2.3023 34 1 4.5501 -1.0330 4.2167 35 1 5.2662 0.5021 4.7637 36 1 6.8811 -2.0381 6.8850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715127152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:33 Heat of formation + Delta-G solvation = -8.118639 kcal Electronic energy + Delta-G solvation = -16520.426315 eV Core-core repulsion = 13812.164485 eV Total energy + Delta-G solvation = -2708.261830 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10348 -37.14722 -34.63404 -33.74501 -32.77333 -30.64584 -29.28893 -27.17814 -26.20101 -23.93068 -22.60885 -22.32007 -20.39253 -19.58404 -16.78574 -16.57320 -15.64344 -15.48537 -15.16816 -14.60779 -14.36163 -14.24834 -13.65776 -13.47276 -13.09487 -12.84882 -12.70119 -12.37206 -12.19640 -11.88539 -11.58762 -11.29017 -11.12432 -10.97384 -10.93810 -10.81553 -10.21642 -9.86218 -9.42760 -9.26169 -9.01527 -8.34995 -8.14044 -6.20622 -4.23938 2.08274 2.78145 3.13038 3.26063 3.29373 3.32735 4.24866 4.35718 4.59939 4.75706 4.88397 5.09233 5.15876 5.20833 5.25208 5.34736 5.38905 5.49739 5.55865 5.69219 5.73874 5.79695 5.84494 5.89705 5.95421 6.09664 6.12817 6.45697 6.85663 6.92524 7.26486 7.26805 7.66564 8.00057 8.19131 8.35564 8.86973 9.41282 10.90696 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.004347 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.448911 B = 6439.220190 C = 6826.478396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C 0.214 3.786 4 N -0.492 5.492 5 C -0.008 4.008 6 C -0.063 4.063 7 C -0.055 4.055 8 N -0.446 5.446 9 C 0.105 3.895 10 C 0.052 3.948 11 O -0.393 6.393 12 C 0.198 3.802 13 C -0.521 4.521 14 H 0.067 0.933 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.911 3.089 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.172 0.828 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 7.299 -11.933 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C -0.048 4.048 4 N -0.211 5.211 5 C -0.137 4.137 6 C -0.121 4.121 7 C -0.188 4.188 8 N -0.129 5.129 9 C -0.018 4.018 10 C -0.026 4.026 11 O -0.312 6.312 12 C 0.124 3.876 13 C -0.559 4.559 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.737 3.263 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.189 0.811 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.254 6.942 -12.414 16.444 hybrid contribution 0.474 -0.023 1.714 1.779 sum -7.780 6.919 -10.700 14.929 Atomic orbital electron populations 1.21719 0.93997 1.02273 1.02287 1.20019 0.96424 0.87419 1.04359 1.23225 1.03885 0.96506 0.81226 1.70105 1.18842 1.03813 1.28366 1.20671 1.06309 0.94952 0.91814 1.19969 1.01046 0.93454 0.97597 1.22469 1.09868 0.90331 0.96163 1.45296 1.48547 1.11711 1.07392 1.21735 0.99984 1.01668 0.78366 1.22433 0.95411 0.97565 0.87238 1.87801 1.44656 1.76088 1.22698 1.20266 0.82939 0.90106 0.94302 1.20981 1.03197 1.36074 0.95626 0.91457 1.24955 0.94689 0.95508 0.99209 1.69952 1.06808 1.39314 1.37473 0.86356 0.77776 0.78751 0.83375 1.19916 1.21055 1.19940 0.92805 0.92085 0.91549 0.88792 0.89898 0.91653 0.91488 0.91592 0.81064 0.88264 0.88201 0.93770 0.93770 0.97428 0.97496 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.04 -0.52 6.09 -27.89 -0.17 -0.69 16 3 C 0.21 3.14 7.16 -155.41 -1.11 2.03 16 4 N -0.49 -7.82 11.25 -7.07 -0.08 -7.90 16 5 C -0.01 -0.12 7.09 -82.85 -0.59 -0.71 16 6 C -0.06 -0.66 10.42 36.00 0.38 -0.28 16 7 C -0.06 -0.75 11.48 -16.56 -0.19 -0.94 16 8 N -0.45 -6.38 2.75 -113.91 -0.31 -6.70 16 9 C 0.10 1.48 6.04 -4.04 -0.02 1.46 16 10 C 0.05 0.93 6.26 37.16 0.23 1.16 16 11 O -0.39 -8.99 10.33 -35.23 -0.36 -9.36 16 12 C 0.20 5.29 5.69 36.00 0.20 5.49 16 13 C -0.52 -14.94 9.43 -34.44 -0.32 -15.27 16 14 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 17 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 0.99 7.34 -51.93 -0.38 0.61 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.10 1.30 7.94 -51.93 -0.41 0.89 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.78 7.64 -51.93 -0.40 0.39 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -31.96 310.15 -7.50 -39.46 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.81 Total: -3.54 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.33 Total: -7.30 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.34 Total: -40.24 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.36 Total: -9.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.96 -7.50 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715127152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.345 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds