Wall clock time and date at job start Sun Mar 29 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51434 * 121.11194 * 2 1 4 4 C 1.53296 * 108.24224 * 229.00355 * 3 2 1 5 5 N 1.46833 * 109.40125 * 306.20616 * 4 3 2 6 6 C 1.46889 * 111.00092 * 189.74989 * 5 4 3 7 7 C 1.50706 * 109.47109 * 170.00098 * 6 5 4 8 8 O 1.21281 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47148 * 179.72251 * 10 9 7 12 12 H 1.08002 * 120.00318 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99801 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99967 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47280 * 89.99544 * 15 13 11 17 17 H 1.48504 * 109.46876 * 209.99818 * 15 13 11 18 18 H 1.48502 * 109.46730 * 329.99316 * 15 13 11 19 19 C 1.46834 * 111.55958 * 65.38401 * 5 4 3 20 20 C 1.51427 * 121.10803 * 179.97438 * 2 1 3 21 21 H 1.08010 * 119.99677 * 0.02562 * 1 2 3 22 22 H 1.07993 * 120.00456 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.71337 * 109.31548 * 3 2 1 24 24 H 1.08998 * 109.71039 * 348.69278 * 3 2 1 25 25 H 1.09005 * 109.48659 * 186.22607 * 4 3 2 26 26 H 1.09003 * 109.48177 * 66.18570 * 4 3 2 27 27 H 1.09004 * 109.47256 * 50.00465 * 6 5 4 28 28 H 1.08998 * 109.47820 * 290.00275 * 6 5 4 29 29 H 0.97005 * 120.00161 * 359.72088 * 9 7 6 30 30 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 31 31 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 32 32 H 0.97005 * 119.99977 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.48201 * 54.59728 * 19 5 4 34 34 H 1.09004 * 109.47760 * 174.63417 * 19 5 4 35 35 H 1.09001 * 109.71493 * 250.68058 * 20 2 1 36 36 H 1.09004 * 109.71459 * 11.30894 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0925 1.2965 0.0000 4 6 3.1582 1.2139 -1.0988 5 7 3.9617 -0.0003 -0.9087 6 6 5.1331 -0.0005 -1.7950 7 6 6.0575 -1.1253 -1.4056 8 8 5.7689 -1.8546 -0.4805 9 7 7.2051 -1.3202 -2.0847 10 6 8.1034 -2.4140 -1.7066 11 6 9.3022 -2.4180 -2.6197 12 1 9.3865 -1.6799 -3.4036 13 6 10.2916 -3.3639 -2.4543 14 7 11.3376 -3.3677 -3.2515 15 14 10.1457 -4.6410 -1.0988 16 1 9.4346 -5.8363 -1.6193 17 1 11.5025 -5.0329 -0.6399 18 1 9.3839 -4.0688 0.0403 19 6 3.1581 -1.2144 -1.0983 20 6 2.0924 -1.2965 0.0006 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 2.5731 1.4359 0.9683 24 1 1.4210 2.1312 -0.2012 25 1 3.8047 2.0898 -1.0450 26 1 2.6727 1.1795 -2.0742 27 1 5.6587 0.9500 -1.7029 28 1 4.8084 -0.1376 -2.8264 29 1 7.4343 -0.7389 -2.8268 30 1 8.4317 -2.2748 -0.6765 31 1 7.5763 -3.3640 -1.7946 32 1 12.0335 -4.0335 -3.1354 33 1 2.6727 -1.1804 -2.0737 34 1 3.8046 -2.0904 -1.0441 35 1 2.5730 -1.4355 0.9690 36 1 1.4208 -2.1313 -0.2003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731033153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:10 Heat of formation + Delta-G solvation = -41.893194 kcal Electronic energy + Delta-G solvation = -16778.033517 eV Core-core repulsion = 14068.307112 eV Total energy + Delta-G solvation = -2709.726405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91988 -39.31002 -36.18257 -35.38522 -34.39882 -32.02333 -30.96388 -29.42453 -26.58220 -24.42502 -23.92378 -22.37442 -21.42952 -19.21436 -19.11775 -17.68962 -17.29463 -16.61357 -16.36892 -15.91018 -15.72784 -15.63049 -15.20842 -14.68051 -14.56113 -14.14908 -13.98834 -13.85885 -13.28272 -13.07696 -12.94152 -12.71051 -12.48660 -12.15466 -11.93948 -11.68333 -11.65191 -11.33582 -10.91989 -10.66958 -9.98278 -9.86953 -9.22755 -8.40493 -6.47259 1.32087 1.34547 1.37555 1.47299 1.76855 2.27282 2.32301 2.94972 3.04764 3.80309 3.85200 3.95494 4.20372 4.24781 4.33353 4.41788 4.48860 4.55692 4.67836 4.79600 4.82910 4.92153 4.96805 5.03660 5.06792 5.11011 5.21170 5.26802 5.55329 5.74314 5.85072 6.06615 6.12291 6.18447 6.54085 6.89112 7.16222 7.46346 8.74258 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054217 B = 0.004567 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.323195 B = 6129.894996 C = 6477.362266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.080 4.080 4 C 0.060 3.940 5 N -0.542 5.542 6 C 0.048 3.952 7 C 0.498 3.502 8 O -0.579 6.579 9 N -0.708 5.708 10 C 0.234 3.766 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.931 5.931 15 Si 0.937 3.063 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.262 1.262 19 C 0.057 3.943 20 C -0.078 4.078 21 H 0.113 0.887 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.272 0.728 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 9.860 3.493 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.136 4.136 3 C -0.117 4.117 4 C -0.067 4.067 5 N -0.268 5.268 6 C -0.083 4.083 7 C 0.285 3.715 8 O -0.459 6.459 9 N -0.359 5.359 10 C 0.110 3.890 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.570 5.570 15 Si 0.761 3.239 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.186 1.186 19 C -0.070 4.070 20 C -0.116 4.116 21 H 0.131 0.869 22 H 0.119 0.881 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.244 0.756 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.862 9.256 4.573 22.385 hybrid contribution 0.429 -0.705 -0.723 1.097 sum -19.433 8.551 3.851 21.578 Atomic orbital electron populations 1.23760 0.94419 1.02722 1.01935 1.22106 0.95407 0.95890 1.00158 1.20898 0.96548 0.94940 0.99299 1.22220 0.95046 0.91764 0.97711 1.61335 1.08075 1.03221 1.54121 1.21933 0.91770 0.98147 0.96447 1.21291 0.82023 0.86188 0.82005 1.90606 1.74974 1.49304 1.31045 1.46031 1.20944 1.33532 1.35370 1.19045 0.88375 0.86474 0.95092 1.21308 1.04237 1.16312 1.16553 0.92178 1.25599 0.94434 0.99284 0.98094 1.69981 1.10598 1.36814 1.39626 0.85858 0.78179 0.79724 0.80119 1.19009 1.19773 1.18630 1.22148 0.94689 0.93210 0.96986 1.20790 0.96202 0.95774 0.98801 0.86865 0.88146 0.90927 0.88615 0.88717 0.93862 0.85315 0.89960 0.75598 0.97176 0.97289 0.91845 0.94637 0.91706 0.91913 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 14.01 67.78 0.95 -2.14 16 2 C -0.14 -2.68 5.41 -16.03 -0.09 -2.77 16 3 C -0.08 -1.38 6.21 30.18 0.19 -1.20 16 4 C 0.06 1.10 5.51 86.41 0.48 1.58 16 5 N -0.54 -14.14 4.32 -899.94 -3.89 -18.03 16 6 C 0.05 1.21 5.45 85.56 0.47 1.68 16 7 C 0.50 18.45 7.46 87.66 0.65 19.10 16 8 O -0.58 -26.24 14.33 -3.03 -0.04 -26.28 16 9 N -0.71 -28.09 5.55 -466.78 -2.59 -30.68 16 10 C 0.23 11.56 4.50 85.63 0.38 11.95 16 11 C -0.55 -30.25 9.83 25.60 0.25 -30.00 16 12 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 13 C 0.03 1.49 5.47 84.66 0.46 1.95 16 14 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 15 Si 0.94 44.46 27.47 68.60 1.88 46.34 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 19 C 0.06 1.57 5.13 86.41 0.44 2.02 16 20 C -0.08 -1.89 6.21 30.18 0.19 -1.70 16 21 H 0.11 1.42 7.95 -2.91 -0.02 1.40 16 22 H 0.10 1.51 7.95 -2.91 -0.02 1.49 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.19 7.93 -2.39 -0.02 1.17 16 25 H 0.09 1.42 7.94 -2.38 -0.02 1.41 16 26 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 27 H 0.13 2.59 7.93 -2.39 -0.02 2.57 16 28 H 0.08 1.75 8.13 -2.39 -0.02 1.73 16 29 H 0.41 13.96 8.32 -92.70 -0.77 13.19 16 30 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 31 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 32 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 33 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.06 2.23 5.72 -2.38 -0.01 2.21 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 Total: -1.00 -68.46 294.77 0.27 -68.19 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.23 Total: 15.48 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.38 Total: 0.47 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.18 Total: -104.20 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.04 Total: -26.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -68.46 0.27 -68.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731033153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds