Wall clock time and date at job start Sun Mar 29 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47123 * 120.00635 * 2 1 3 5 5 N 1.46902 * 109.46969 * 177.08082 * 4 2 1 6 6 C 1.46894 * 110.99838 * 287.86768 * 5 4 2 7 7 C 1.50704 * 109.47337 * 160.45245 * 6 5 4 8 8 H 1.08000 * 119.99304 * 4.70748 * 7 6 5 9 9 C 1.37875 * 120.00104 * 184.71541 * 7 6 5 10 10 N 1.31510 * 120.00095 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99756 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47180 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46841 * 120.00022 * 11 9 7 14 14 H 1.48493 * 109.47136 * 239.99696 * 11 9 7 15 15 C 1.46904 * 110.99938 * 163.91879 * 5 4 2 16 16 C 1.50699 * 109.46800 * 293.95394 * 15 5 4 17 17 C 1.41382 * 126.80581 * 94.71045 * 16 15 5 18 18 C 1.35455 * 103.98546 * 180.25652 * 17 16 15 19 19 O 1.34042 * 106.44640 * 0.02562 * 18 17 16 20 20 N 1.20926 * 111.56625 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47151 * 299.99961 * 1 2 3 22 22 H 1.09003 * 109.47045 * 59.99750 * 1 2 3 23 23 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46859 * 240.00502 * 2 1 3 25 25 H 1.08990 * 109.47405 * 300.00418 * 3 2 1 26 26 H 1.09008 * 109.46700 * 60.00394 * 3 2 1 27 27 H 1.08994 * 109.46891 * 179.97438 * 3 2 1 28 28 H 1.08989 * 109.47276 * 57.07622 * 4 2 1 29 29 H 1.09002 * 109.47072 * 297.07518 * 4 2 1 30 30 H 1.09002 * 109.47720 * 280.45586 * 6 5 4 31 31 H 1.09007 * 109.47144 * 40.45208 * 6 5 4 32 32 H 0.97003 * 120.00114 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47082 * 173.95191 * 15 5 4 34 34 H 1.09001 * 109.46761 * 53.94907 * 15 5 4 35 35 H 1.08001 * 128.00645 * 0.24240 * 17 16 15 36 36 H 1.08000 * 126.77438 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5073 -0.7827 1.2143 6 6 3.9703 -1.7404 0.2013 7 6 5.4060 -1.4458 -0.1497 8 1 5.9460 -0.6787 0.3854 9 6 6.0298 -2.1555 -1.1538 10 7 5.3721 -3.0898 -1.8050 11 14 7.8092 -1.7897 -1.5891 12 1 8.3194 -0.7030 -0.7151 13 1 8.6290 -3.0116 -1.3886 14 1 7.8939 -1.3645 -3.0093 15 6 4.0520 -1.1125 2.5382 16 6 3.7629 0.0150 3.4954 17 6 2.6658 0.1134 4.3817 18 6 2.8568 1.2987 5.0088 19 8 3.9833 1.8191 4.5018 20 7 4.4706 1.0942 3.6655 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8898 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6346 -1.7327 1.2756 29 1 1.7201 -0.1782 2.1384 30 1 3.8934 -2.7533 0.5966 31 1 3.3522 -1.6514 -0.6922 32 1 5.8112 -3.5893 -2.5112 33 1 5.1296 -1.2571 2.4620 34 1 3.5874 -2.0281 2.9044 35 1 1.8615 -0.5929 4.5253 36 1 2.2256 1.7382 5.7670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740878609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:57 Heat of formation + Delta-G solvation = 54.413071 kcal Electronic energy + Delta-G solvation = -17426.327794 eV Core-core repulsion = 14720.777542 eV Total energy + Delta-G solvation = -2705.550252 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.61866 -37.67380 -34.57118 -33.41860 -32.15069 -31.33063 -27.55422 -26.83899 -26.59768 -23.83576 -22.84624 -21.54290 -20.40555 -18.98893 -17.43920 -17.24558 -16.45015 -15.16982 -14.83068 -14.52799 -14.19038 -13.76539 -13.48762 -13.15796 -12.71070 -12.43271 -12.05416 -11.86240 -11.53260 -11.37292 -11.21847 -10.78862 -10.74292 -10.59653 -10.43893 -10.26384 -10.11661 -9.79244 -9.68296 -9.33304 -9.13951 -8.40355 -7.27479 -6.00678 -4.01266 1.77591 2.56679 3.33358 3.40975 3.47770 3.53020 4.45592 4.57682 4.79692 5.01548 5.35088 5.36953 5.38492 5.46849 5.54172 5.69901 5.82632 5.91775 6.03403 6.09981 6.13859 6.22654 6.25899 6.29201 6.46255 6.51924 6.58136 6.88945 7.02676 7.20842 7.30946 7.84620 8.10025 8.17085 8.53613 8.65563 9.07384 9.63131 11.09874 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.008120 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.324283 B = 3447.303501 C = 4351.405170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.131 4.131 4 C 0.058 3.942 5 N -0.525 5.525 6 C 0.192 3.808 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.135 3.865 16 C 0.038 3.962 17 C -0.233 4.233 18 C -0.076 4.076 19 O 0.093 5.907 20 N -0.347 5.347 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.059 0.941 30 H -0.010 1.010 31 H 0.040 0.960 32 H 0.260 0.740 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.165 0.835 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 6.097 10.684 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.188 4.188 4 C -0.070 4.070 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.542 4.542 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.210 1.210 15 C 0.006 3.994 16 C -0.122 4.122 17 C -0.255 4.255 18 C -0.157 4.157 19 O 0.027 5.973 20 N -0.051 5.051 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.007 0.993 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.182 0.818 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.785 6.890 9.857 14.326 hybrid contribution -0.257 -1.226 0.163 1.263 sum -8.042 5.664 10.020 14.041 Atomic orbital electron populations 1.21811 0.96255 1.01030 1.00979 1.21091 0.93771 0.97195 0.99061 1.21632 1.03052 0.94864 0.99245 1.22141 0.89600 0.97672 0.97607 1.62070 1.06041 1.52979 1.03953 1.19812 0.96402 0.87727 0.89272 1.21225 0.96224 1.18963 1.17760 0.91777 1.24965 0.98255 0.95181 0.96145 1.69961 1.36760 1.23459 1.23831 0.86480 0.84827 0.78130 0.78277 1.19589 1.21168 1.21043 1.20305 1.02528 0.89455 0.87128 1.23820 0.92757 0.96475 0.99137 1.22758 1.02126 0.99911 1.00675 1.25883 0.91852 0.95751 1.02261 1.84871 1.31627 1.40681 1.40153 1.73898 1.21140 1.04044 1.05980 0.93392 0.93008 0.93182 0.90432 0.94218 0.94393 0.90815 0.95942 0.92238 0.99252 0.94203 0.93036 0.88325 0.93916 0.81770 0.77381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 2 C -0.09 -1.60 2.92 -90.62 -0.26 -1.87 16 3 C -0.13 -2.26 9.06 37.16 0.34 -1.92 16 4 C 0.06 1.05 4.24 -3.82 -0.02 1.04 16 5 N -0.53 -11.24 3.73 -237.52 -0.89 -12.13 16 6 C 0.19 4.93 4.59 -4.98 -0.02 4.90 16 7 C -0.50 -14.18 8.61 -34.44 -0.30 -14.48 16 8 H 0.06 1.84 7.65 -52.49 -0.40 1.44 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.13 2.64 5.38 -4.97 -0.03 2.61 16 16 C 0.04 0.66 6.07 -82.10 -0.50 0.16 16 17 C -0.23 -3.06 9.77 -39.38 -0.38 -3.44 16 18 C -0.08 -0.85 12.30 29.74 0.37 -0.48 16 19 O 0.09 1.40 11.20 17.17 0.19 1.59 16 20 N -0.35 -6.37 12.07 33.42 0.40 -5.97 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.55 6.47 -51.93 -0.34 1.21 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.07 1.50 7.69 -51.93 -0.40 1.10 16 28 H 0.02 0.41 8.05 -51.94 -0.42 -0.01 16 29 H 0.06 0.98 5.84 -51.93 -0.30 0.68 16 30 H -0.01 -0.28 8.00 -51.93 -0.42 -0.69 16 31 H 0.04 1.09 6.22 -51.93 -0.32 0.76 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.10 2.14 7.31 -51.93 -0.38 1.76 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -31.01 299.23 -6.12 -37.13 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.49 Total: -2.55 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.56 Total: -13.63 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.25 Total: -44.07 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.01 -6.12 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740878609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.545 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds