Wall clock time and date at job start Sun Mar 29 2020 22:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47123 * 120.00635 * 2 1 3 5 5 N 1.46902 * 109.46969 * 177.08082 * 4 2 1 6 6 C 1.46894 * 110.99838 * 287.86768 * 5 4 2 7 7 C 1.50704 * 109.47337 * 160.45245 * 6 5 4 8 8 H 1.08000 * 119.99304 * 4.70748 * 7 6 5 9 9 C 1.37875 * 120.00104 * 184.71541 * 7 6 5 10 10 N 1.31510 * 120.00095 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99756 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47180 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46841 * 120.00022 * 11 9 7 14 14 H 1.48493 * 109.47136 * 239.99696 * 11 9 7 15 15 C 1.46904 * 110.99938 * 163.91879 * 5 4 2 16 16 C 1.50699 * 109.46800 * 293.95394 * 15 5 4 17 17 C 1.41382 * 126.80581 * 94.71045 * 16 15 5 18 18 C 1.35455 * 103.98546 * 180.25652 * 17 16 15 19 19 O 1.34042 * 106.44640 * 0.02562 * 18 17 16 20 20 N 1.20926 * 111.56625 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47151 * 299.99961 * 1 2 3 22 22 H 1.09003 * 109.47045 * 59.99750 * 1 2 3 23 23 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46859 * 240.00502 * 2 1 3 25 25 H 1.08990 * 109.47405 * 300.00418 * 3 2 1 26 26 H 1.09008 * 109.46700 * 60.00394 * 3 2 1 27 27 H 1.08994 * 109.46891 * 179.97438 * 3 2 1 28 28 H 1.08989 * 109.47276 * 57.07622 * 4 2 1 29 29 H 1.09002 * 109.47072 * 297.07518 * 4 2 1 30 30 H 1.09002 * 109.47720 * 280.45586 * 6 5 4 31 31 H 1.09007 * 109.47144 * 40.45208 * 6 5 4 32 32 H 0.97003 * 120.00114 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47082 * 173.95191 * 15 5 4 34 34 H 1.09001 * 109.46761 * 53.94907 * 15 5 4 35 35 H 1.08001 * 128.00645 * 0.24240 * 17 16 15 36 36 H 1.08000 * 126.77438 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5073 -0.7827 1.2143 6 6 3.9703 -1.7404 0.2013 7 6 5.4060 -1.4458 -0.1497 8 1 5.9460 -0.6787 0.3854 9 6 6.0298 -2.1555 -1.1538 10 7 5.3721 -3.0898 -1.8050 11 14 7.8092 -1.7897 -1.5891 12 1 8.3194 -0.7030 -0.7151 13 1 8.6290 -3.0116 -1.3886 14 1 7.8939 -1.3645 -3.0093 15 6 4.0520 -1.1125 2.5382 16 6 3.7629 0.0150 3.4954 17 6 2.6658 0.1134 4.3817 18 6 2.8568 1.2987 5.0088 19 8 3.9833 1.8191 4.5018 20 7 4.4706 1.0942 3.6655 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8898 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6346 -1.7327 1.2756 29 1 1.7201 -0.1782 2.1384 30 1 3.8934 -2.7533 0.5966 31 1 3.3522 -1.6514 -0.6922 32 1 5.8112 -3.5893 -2.5112 33 1 5.1296 -1.2571 2.4620 34 1 3.5874 -2.0281 2.9044 35 1 1.8615 -0.5929 4.5253 36 1 2.2256 1.7382 5.7670 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740878609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:56 Heat of formation + Delta-G solvation = 34.314696 kcal Electronic energy + Delta-G solvation = -17427.199325 eV Core-core repulsion = 14720.777542 eV Total energy + Delta-G solvation = -2706.421783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.81870 -39.27446 -35.92902 -35.17043 -33.92090 -32.48524 -29.52417 -28.30593 -27.91396 -25.66712 -24.01090 -23.22027 -21.67864 -20.48033 -18.67115 -18.58746 -18.40266 -16.81771 -16.57166 -16.01243 -15.78852 -15.15650 -15.01456 -14.24885 -14.23031 -14.08397 -13.74971 -13.28959 -13.05782 -12.98207 -12.75586 -12.61771 -12.48139 -12.15963 -12.02502 -11.77843 -11.69419 -11.34873 -11.27196 -10.91982 -10.61110 -10.43830 -9.01894 -8.21938 -6.30772 0.77780 1.35556 1.36476 1.37355 1.51100 2.38104 2.62557 3.08853 3.27717 3.38383 3.81484 3.96274 4.15019 4.31697 4.37248 4.42367 4.56405 4.66787 4.69372 4.80495 4.86012 4.87265 4.92646 5.05288 5.08130 5.16912 5.20755 5.24685 5.32706 5.50313 5.57606 5.66295 6.06787 6.32566 6.61074 6.84025 7.38237 7.55716 8.88362 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.008120 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.324283 B = 3447.303501 C = 4351.405170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.122 4.122 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.211 3.789 7 C -0.519 4.519 8 H 0.050 0.950 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.272 1.272 13 H -0.275 1.275 14 H -0.276 1.276 15 C 0.138 3.862 16 C 0.012 3.988 17 C -0.238 4.238 18 C -0.045 4.045 19 O 0.094 5.906 20 N -0.392 5.392 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.084 0.916 30 H -0.035 1.035 31 H 0.017 0.983 32 H 0.265 0.735 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.192 0.808 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 7.407 12.324 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.179 4.179 4 C -0.067 4.067 5 N -0.259 5.259 6 C 0.085 3.915 7 C -0.557 4.557 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.196 1.196 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.010 3.990 16 C -0.146 4.146 17 C -0.260 4.260 18 C -0.126 4.126 19 O 0.026 5.974 20 N -0.095 5.095 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.102 0.898 30 H -0.017 1.017 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.209 0.791 36 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -9.305 8.196 11.501 16.912 hybrid contribution 0.162 -1.588 -0.256 1.617 sum -9.144 6.608 11.245 15.928 Atomic orbital electron populations 1.21724 0.92851 1.01907 1.02624 1.21098 0.96570 0.96604 0.97035 1.21527 1.00390 0.95205 1.00808 1.22229 0.87252 0.98130 0.99093 1.61955 1.08445 1.51366 1.04166 1.19396 0.95044 0.87377 0.89650 1.21444 0.97602 1.18710 1.17957 0.93139 1.25784 1.02553 0.94885 0.95943 1.70062 1.38557 1.24244 1.24319 0.85454 0.79654 0.78150 0.78106 1.19628 1.20045 1.20140 1.20104 1.00414 0.91509 0.87003 1.23631 0.94953 0.95898 1.00140 1.23028 1.01622 1.01425 0.99940 1.26894 0.89984 0.94446 1.01238 1.84813 1.32940 1.40166 1.39466 1.73904 1.22836 1.05004 1.07782 0.91209 0.91873 0.92745 0.94119 0.92717 0.92670 0.94789 0.96022 0.89752 1.01714 0.96461 0.92640 0.91860 0.92739 0.79076 0.71647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.19 71.98 0.66 -2.72 16 2 C -0.09 -3.25 2.92 -10.79 -0.03 -3.28 16 3 C -0.12 -4.15 9.06 71.98 0.65 -3.50 16 4 C 0.06 2.18 4.24 86.30 0.37 2.55 16 5 N -0.53 -23.76 3.73 -905.37 -3.38 -27.14 16 6 C 0.21 11.44 4.59 85.56 0.39 11.83 16 7 C -0.52 -30.66 8.61 25.60 0.22 -30.44 16 8 H 0.05 3.06 7.65 -2.91 -0.02 3.04 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 11 Si 0.96 46.26 29.54 68.60 2.03 48.28 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.14 5.62 5.38 85.56 0.46 6.08 16 16 C 0.01 0.42 6.07 43.58 0.26 0.68 16 17 C -0.24 -5.49 9.77 22.40 0.22 -5.27 16 18 C -0.04 -0.80 12.30 67.18 0.83 0.02 16 19 O 0.09 2.61 11.20 71.61 0.80 3.41 16 20 N -0.39 -14.27 12.07 -49.55 -0.60 -14.87 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.04 1.69 6.47 -2.39 -0.02 1.68 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.03 1.40 7.69 -2.39 -0.02 1.39 16 28 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16 29 H 0.08 2.61 5.84 -2.39 -0.01 2.60 16 30 H -0.03 -2.00 8.00 -2.39 -0.02 -2.02 16 31 H 0.02 1.01 6.22 -2.38 -0.01 0.99 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.06 2.95 7.31 -2.39 -0.02 2.93 16 34 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.27 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -71.33 299.23 4.67 -66.66 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.05 Total: 3.37 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.49 Total: -23.19 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -3.69 Total: -98.52 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.80 Total: 3.41 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.33 4.67 -66.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740878609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.972 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds