Wall clock time and date at job start Sun Mar 29 2020 21:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47053 * 120.00053 * 3 2 1 6 6 H 1.48493 * 109.47287 * 240.00326 * 3 2 1 7 7 C 1.38945 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 198.20410 * 7 2 1 9 9 N 1.37098 * 120.00124 * 18.20676 * 7 2 1 10 10 C 1.34775 * 119.99644 * 44.28919 * 9 7 2 11 11 O 1.21294 * 120.00564 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47199 * 179.97438 * 12 10 9 14 14 C 1.48527 * 110.99661 * 52.60680 * 13 12 10 15 15 C 1.54942 * 103.22498 * 159.72144 * 14 13 12 16 16 C 1.54595 * 102.92080 * 322.58158 * 15 14 13 17 17 C 1.47901 * 110.99669 * 170.00002 * 13 12 10 18 18 C 1.46495 * 119.99845 * 224.28762 * 9 7 2 19 19 C 1.52995 * 117.50374 * 3.22617 * 18 9 7 20 20 C 1.52992 * 117.50096 * 294.60129 * 18 9 7 21 21 H 0.96998 * 120.00008 * 354.92288 * 1 2 3 22 22 H 1.09003 * 109.47107 * 300.00212 * 12 10 9 23 23 H 1.09005 * 109.47284 * 59.99877 * 12 10 9 24 24 H 1.09002 * 110.66838 * 278.15359 * 14 13 12 25 25 H 1.09005 * 110.67165 * 41.28444 * 14 13 12 26 26 H 1.09007 * 110.71807 * 204.22408 * 15 14 13 27 27 H 1.08997 * 110.72527 * 80.94438 * 15 14 13 28 28 H 1.09002 * 110.30786 * 263.04365 * 16 15 14 29 29 H 1.09002 * 110.30423 * 140.87303 * 16 15 14 30 30 H 1.08993 * 109.92141 * 333.50946 * 17 13 12 31 31 H 1.09002 * 109.91455 * 94.60949 * 17 13 12 32 32 H 1.09011 * 115.54677 * 148.93476 * 18 9 7 33 33 H 1.09005 * 117.49473 * 0.02562 * 19 18 9 34 34 H 1.09004 * 117.50398 * 145.01482 * 19 18 9 35 35 H 1.09001 * 117.49789 * 214.97962 * 20 18 9 36 36 H 1.08993 * 117.50138 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0484 -1.2268 0.2916 9 7 1.3749 -2.3607 -0.3720 10 6 0.5784 -2.3737 -1.4591 11 8 0.4220 -1.3612 -2.1086 12 6 -0.1180 -3.6461 -1.8678 13 7 -0.9205 -3.3996 -3.0734 14 6 -0.0982 -2.7763 -4.1418 15 6 -0.9051 -3.0756 -5.4302 16 6 -1.4533 -4.4979 -5.1722 17 6 -1.4261 -4.6680 -3.6419 18 6 1.5634 -3.5834 0.4127 19 6 2.4185 -3.4863 1.6776 20 6 2.9643 -4.1977 0.4380 21 1 -0.4850 0.8367 0.0743 22 1 0.6249 -4.4160 -2.0765 23 1 -0.7696 -3.9793 -1.0600 24 1 -0.0118 -1.7014 -3.9830 25 1 0.8873 -3.2398 -4.1887 26 1 -0.2537 -3.0659 -6.3042 27 1 -1.7215 -2.3631 -5.5483 28 1 -0.8135 -5.2418 -5.6470 29 1 -2.4743 -4.5830 -5.5442 30 1 -0.7606 -5.4876 -3.3712 31 1 -2.4309 -4.8672 -3.2696 32 1 0.7139 -4.2663 0.4302 33 1 2.8406 -2.5125 1.9262 34 1 2.1318 -4.1052 2.5278 35 1 3.0367 -5.2847 0.4726 36 1 3.7458 -3.6924 -0.1295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753884995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:18 Heat of formation + Delta-G solvation = 18.995547 kcal Electronic energy + Delta-G solvation = -17792.709607 eV Core-core repulsion = 15085.623536 eV Total energy + Delta-G solvation = -2707.086071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06847 -37.72073 -35.85686 -32.83380 -31.67981 -30.73636 -28.37000 -26.57650 -24.15113 -21.71097 -21.18194 -20.77579 -20.47517 -19.08839 -16.41078 -16.05044 -15.50917 -15.31197 -14.56979 -14.25879 -13.96808 -13.70036 -13.25475 -12.81786 -12.35391 -12.03380 -11.80331 -11.48972 -11.16584 -11.05657 -11.02905 -10.89735 -10.79627 -10.58874 -10.29705 -10.17888 -10.13881 -9.94409 -9.71050 -8.64349 -8.02310 -7.64761 -6.94473 -6.05011 -3.81860 3.32817 3.40295 3.42965 4.14251 4.26589 4.49802 4.78879 4.88825 5.05321 5.10842 5.25580 5.33633 5.59400 5.66384 5.67788 5.78755 5.82291 5.91090 6.01873 6.03397 6.11091 6.14852 6.22226 6.23512 6.36023 6.47078 6.53519 6.74466 6.89927 6.94454 7.47904 7.53100 7.66913 8.33145 9.11654 9.23241 9.71603 10.36347 11.03414 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.009018 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.480516 B = 3104.316105 C = 3991.449445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.075 0.925 9 N -0.429 5.429 10 C 0.486 3.514 11 O -0.517 6.517 12 C 0.035 3.965 13 N -0.497 5.497 14 C 0.038 3.962 15 C -0.127 4.127 16 C -0.129 4.129 17 C 0.033 3.967 18 C 0.075 3.925 19 C -0.173 4.173 20 C -0.209 4.209 21 H 0.264 0.736 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -9.484 -4.047 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.478 4.478 8 H 0.093 0.907 9 N -0.151 5.151 10 C 0.273 3.727 11 O -0.394 6.394 12 C -0.096 4.096 13 N -0.221 5.221 14 C -0.089 4.089 15 C -0.165 4.165 16 C -0.167 4.167 17 C -0.096 4.096 18 C -0.031 4.031 19 C -0.210 4.210 20 C -0.248 4.248 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.134 0.866 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.640 -8.465 -4.292 9.513 hybrid contribution 1.026 0.011 0.086 1.029 sum 0.386 -8.454 -4.206 9.450 Atomic orbital electron populations 1.69830 1.06431 1.27462 1.42422 1.25237 0.94801 0.99262 0.94358 0.86291 0.79273 0.82130 0.78375 1.21217 1.20480 1.20034 1.18757 0.94358 0.83857 1.50848 0.90705 1.42747 1.44338 1.06746 1.21285 1.19603 0.82683 0.88801 0.81635 1.90437 1.61953 1.34365 1.52616 1.22221 0.95874 0.97497 0.94041 1.64597 1.34305 1.19145 1.04054 1.23469 0.93303 1.03672 0.88496 1.22557 0.99930 0.96173 0.97886 1.22373 1.01094 0.97624 0.95638 1.22921 1.00517 0.91890 0.94236 1.21697 0.92394 0.91673 0.97381 1.23049 1.04498 1.02459 0.91042 1.23308 0.99894 0.98399 1.03224 0.92545 0.93871 0.89819 0.86567 0.95039 0.91760 0.91038 0.92083 0.91525 0.94437 0.90862 0.88195 0.87468 0.89833 0.89909 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.86 11.74 55.50 0.65 -24.21 16 2 C 0.07 2.11 4.39 -17.47 -0.08 2.03 16 3 Si 0.91 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.35 -9.65 7.92 -14.93 -0.12 -9.77 16 8 H 0.08 1.99 7.26 -52.49 -0.38 1.61 16 9 N -0.43 -10.85 2.83 -107.74 -0.31 -11.16 16 10 C 0.49 12.45 6.68 -10.98 -0.07 12.37 16 11 O -0.52 -15.02 11.28 5.55 0.06 -14.96 16 12 C 0.04 0.73 4.14 -4.97 -0.02 0.71 16 13 N -0.50 -9.76 5.26 -231.88 -1.22 -10.98 16 14 C 0.04 0.73 5.30 -1.90 -0.01 0.72 16 15 C -0.13 -1.91 7.06 -24.87 -0.18 -2.09 16 16 C -0.13 -1.70 6.93 -25.37 -0.18 -1.88 16 17 C 0.03 0.50 6.69 -2.75 -0.02 0.48 16 18 C 0.07 1.52 5.87 -67.94 -0.40 1.12 16 19 C -0.17 -3.15 9.80 -26.74 -0.26 -3.41 16 20 C -0.21 -3.61 10.36 -26.74 -0.28 -3.89 16 21 H 0.26 7.65 8.32 -40.82 -0.34 7.31 16 22 H 0.04 0.80 7.78 -51.93 -0.40 0.40 16 23 H 0.08 1.64 7.56 -51.93 -0.39 1.25 16 24 H 0.12 2.68 5.97 -51.93 -0.31 2.37 16 25 H 0.03 0.60 8.02 -51.93 -0.42 0.19 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.53 7.57 -51.93 -0.39 0.14 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.82 6.96 -51.92 -0.36 1.46 16 33 H 0.11 2.17 6.72 -51.93 -0.35 1.82 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -32.02 288.45 -8.63 -40.64 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.52 Total: 2.82 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.61 Total: -3.60 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.87 Total: -46.35 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.06 Total: -14.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.02 -8.63 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753884995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.638 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds