Wall clock time and date at job start Sun Mar 29 2020 21:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99906 * 2 1 4 4 H 1.48507 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47053 * 120.00053 * 3 2 1 6 6 H 1.48493 * 109.47287 * 240.00326 * 3 2 1 7 7 C 1.38945 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 198.20410 * 7 2 1 9 9 N 1.37098 * 120.00124 * 18.20676 * 7 2 1 10 10 C 1.34775 * 119.99644 * 44.28919 * 9 7 2 11 11 O 1.21294 * 120.00564 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47199 * 179.97438 * 12 10 9 14 14 C 1.48527 * 110.99661 * 52.60680 * 13 12 10 15 15 C 1.54942 * 103.22498 * 159.72144 * 14 13 12 16 16 C 1.54595 * 102.92080 * 322.58158 * 15 14 13 17 17 C 1.47901 * 110.99669 * 170.00002 * 13 12 10 18 18 C 1.46495 * 119.99845 * 224.28762 * 9 7 2 19 19 C 1.52995 * 117.50374 * 3.22617 * 18 9 7 20 20 C 1.52992 * 117.50096 * 294.60129 * 18 9 7 21 21 H 0.96998 * 120.00008 * 354.92288 * 1 2 3 22 22 H 1.09003 * 109.47107 * 300.00212 * 12 10 9 23 23 H 1.09005 * 109.47284 * 59.99877 * 12 10 9 24 24 H 1.09002 * 110.66838 * 278.15359 * 14 13 12 25 25 H 1.09005 * 110.67165 * 41.28444 * 14 13 12 26 26 H 1.09007 * 110.71807 * 204.22408 * 15 14 13 27 27 H 1.08997 * 110.72527 * 80.94438 * 15 14 13 28 28 H 1.09002 * 110.30786 * 263.04365 * 16 15 14 29 29 H 1.09002 * 110.30423 * 140.87303 * 16 15 14 30 30 H 1.08993 * 109.92141 * 333.50946 * 17 13 12 31 31 H 1.09002 * 109.91455 * 94.60949 * 17 13 12 32 32 H 1.09011 * 115.54677 * 148.93476 * 18 9 7 33 33 H 1.09005 * 117.49473 * 0.02562 * 19 18 9 34 34 H 1.09004 * 117.50398 * 145.01482 * 19 18 9 35 35 H 1.09001 * 117.49789 * 214.97962 * 20 18 9 36 36 H 1.08993 * 117.50138 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0484 -1.2268 0.2916 9 7 1.3749 -2.3607 -0.3720 10 6 0.5784 -2.3737 -1.4591 11 8 0.4220 -1.3612 -2.1086 12 6 -0.1180 -3.6461 -1.8678 13 7 -0.9205 -3.3996 -3.0734 14 6 -0.0982 -2.7763 -4.1418 15 6 -0.9051 -3.0756 -5.4302 16 6 -1.4533 -4.4979 -5.1722 17 6 -1.4261 -4.6680 -3.6419 18 6 1.5634 -3.5834 0.4127 19 6 2.4185 -3.4863 1.6776 20 6 2.9643 -4.1977 0.4380 21 1 -0.4850 0.8367 0.0743 22 1 0.6249 -4.4160 -2.0765 23 1 -0.7696 -3.9793 -1.0600 24 1 -0.0118 -1.7014 -3.9830 25 1 0.8873 -3.2398 -4.1887 26 1 -0.2537 -3.0659 -6.3042 27 1 -1.7215 -2.3631 -5.5483 28 1 -0.8135 -5.2418 -5.6470 29 1 -2.4743 -4.5830 -5.5442 30 1 -0.7606 -5.4876 -3.3712 31 1 -2.4309 -4.8672 -3.2696 32 1 0.7139 -4.2663 0.4302 33 1 2.8406 -2.5125 1.9262 34 1 2.1318 -4.1052 2.5278 35 1 3.0367 -5.2847 0.4726 36 1 3.7458 -3.6924 -0.1295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753884995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:18 Heat of formation + Delta-G solvation = -3.008079 kcal Electronic energy + Delta-G solvation = -17793.663755 eV Core-core repulsion = 15085.623536 eV Total energy + Delta-G solvation = -2708.040220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74615 -39.22670 -37.55736 -34.79037 -33.25808 -32.56183 -29.65233 -28.32332 -25.99912 -23.17102 -22.80648 -22.26914 -21.65277 -20.92150 -18.23755 -17.80549 -17.02193 -16.86025 -16.38398 -15.83109 -15.63880 -15.35138 -14.69709 -14.38865 -13.97289 -13.77609 -13.26463 -13.03336 -12.83306 -12.82047 -12.76739 -12.33701 -12.23319 -12.14975 -12.05817 -11.72472 -11.64547 -11.40809 -11.19927 -10.68947 -9.81407 -9.23685 -8.89924 -8.17292 -5.96581 1.35192 1.43907 1.47387 2.24859 2.42553 2.91055 3.12922 3.31772 3.36732 3.82258 3.85699 4.09378 4.14540 4.16731 4.29516 4.36184 4.39600 4.50069 4.58116 4.71608 4.80719 4.88237 4.98272 4.99598 5.03679 5.17683 5.26624 5.32880 5.37644 5.46504 5.50278 6.00785 6.13746 6.25988 7.06216 7.25967 7.72752 8.41217 8.90544 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.009018 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.480516 B = 3104.316105 C = 3991.449445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.289 1.289 5 H -0.256 1.256 6 H -0.282 1.282 7 C -0.357 4.357 8 H 0.076 0.924 9 N -0.447 5.447 10 C 0.467 3.533 11 O -0.565 6.565 12 C 0.051 3.949 13 N -0.524 5.524 14 C 0.039 3.961 15 C -0.121 4.121 16 C -0.120 4.120 17 C 0.030 3.970 18 C 0.042 3.958 19 C -0.170 4.170 20 C -0.180 4.180 21 H 0.258 0.742 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -12.020 -4.251 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.181 1.181 6 H -0.208 1.208 7 C -0.485 4.485 8 H 0.093 0.907 9 N -0.168 5.168 10 C 0.256 3.744 11 O -0.445 6.445 12 C -0.080 4.080 13 N -0.250 5.250 14 C -0.088 4.088 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.097 4.097 18 C -0.063 4.063 19 C -0.207 4.207 20 C -0.219 4.219 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.250 -11.041 -4.466 11.913 hybrid contribution 0.966 0.730 0.161 1.222 sum 0.717 -10.311 -4.306 11.197 Atomic orbital electron populations 1.69955 1.07926 1.27536 1.44939 1.26045 0.95472 1.02505 0.94363 0.85393 0.78110 0.78348 0.78715 1.21430 1.18084 1.20812 1.19008 0.94590 0.85237 1.49657 0.90667 1.42997 1.44074 1.07782 1.21972 1.20565 0.82530 0.90086 0.81235 1.90423 1.63493 1.36490 1.54045 1.22020 0.96186 0.94971 0.94869 1.64529 1.34252 1.22081 1.04096 1.23243 0.93996 1.00728 0.90872 1.22513 0.99491 0.97571 0.96300 1.22376 1.02730 0.96418 0.94231 1.23046 1.01022 0.90115 0.95540 1.22014 0.94912 0.90615 0.98726 1.23103 1.03534 1.02101 0.91990 1.23314 0.96780 1.00448 1.01319 0.93281 0.91635 0.88974 0.91444 0.95613 0.89675 0.91713 0.89788 0.89513 0.92838 0.89894 0.85968 0.90124 0.86419 0.85716 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.18 11.74 21.66 0.25 -53.93 16 2 C 0.02 1.31 4.39 84.92 0.37 1.69 16 3 Si 0.97 46.74 29.59 68.60 2.03 48.77 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.36 -20.07 7.92 84.04 0.67 -19.41 16 8 H 0.08 4.09 7.26 -2.91 -0.02 4.07 16 9 N -0.45 -22.83 2.83 -613.15 -1.74 -24.56 16 10 C 0.47 24.48 6.68 87.66 0.59 25.06 16 11 O -0.56 -34.38 11.28 -3.07 -0.03 -34.42 16 12 C 0.05 2.06 4.14 85.56 0.35 2.41 16 13 N -0.52 -20.32 5.26 -887.54 -4.67 -24.99 16 14 C 0.04 1.53 5.30 86.65 0.46 1.99 16 15 C -0.12 -3.45 7.06 31.80 0.22 -3.22 16 16 C -0.12 -2.74 6.93 31.47 0.22 -2.52 16 17 C 0.03 0.83 6.69 86.45 0.58 1.41 16 18 C 0.04 1.65 5.87 44.99 0.26 1.92 16 19 C -0.17 -5.84 9.80 30.59 0.30 -5.55 16 20 C -0.18 -5.70 10.36 30.59 0.32 -5.38 16 21 H 0.26 15.62 8.32 -92.71 -0.77 14.85 16 22 H 0.07 2.30 7.78 -2.39 -0.02 2.29 16 23 H 0.09 3.50 7.56 -2.38 -0.02 3.48 16 24 H 0.07 3.30 5.97 -2.39 -0.01 3.29 16 25 H 0.03 1.00 8.02 -2.38 -0.02 0.98 16 26 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.31 7.57 -2.39 -0.02 1.29 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 4.16 6.96 -2.38 -0.02 4.14 16 33 H 0.08 3.22 6.72 -2.38 -0.02 3.21 16 34 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.25 288.45 1.23 -72.01 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.05 Total: 18.71 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.34 Total: -1.60 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -6.15 Total: -103.48 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.03 Total: -34.42 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -73.25 1.23 -72.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753884995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.004 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds