Wall clock time and date at job start Sun Mar 29 2020 22:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.50706 * 109.46859 * 120.00218 * 2 1 3 5 5 N 1.28009 * 119.99406 * 239.99825 * 4 2 1 6 6 N 1.40105 * 119.99643 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00003 * 179.97438 * 6 5 4 8 8 O 1.21301 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.53006 * 117.49931 * 248.75175 * 9 7 6 11 11 C 1.52997 * 117.50251 * 180.09239 * 9 7 6 12 12 C 1.52998 * 109.47206 * 239.99600 * 2 1 3 13 13 C 1.50706 * 109.46895 * 60.00174 * 12 2 1 14 14 H 1.07996 * 119.99940 * 0.02562 * 13 12 2 15 15 C 1.37878 * 120.00047 * 179.97438 * 13 12 2 16 16 N 1.31516 * 119.99788 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99993 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00325 * 17 15 13 19 19 H 1.48499 * 109.47134 * 209.99946 * 17 15 13 20 20 H 1.48498 * 109.47118 * 330.00466 * 17 15 13 21 21 H 1.09001 * 109.47000 * 300.00701 * 1 2 3 22 22 H 1.09002 * 109.46917 * 59.99921 * 1 2 3 23 23 H 1.08995 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46857 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47200 * 299.99345 * 3 2 1 26 26 H 1.09000 * 109.46986 * 60.00008 * 3 2 1 27 27 H 1.07995 * 120.00167 * 59.71936 * 4 2 1 28 28 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 29 29 H 1.08998 * 115.55336 * 34.41580 * 9 7 6 30 30 H 1.09001 * 117.49827 * 359.97438 * 10 9 7 31 31 H 1.08998 * 117.49988 * 145.01788 * 10 9 7 32 32 H 1.09000 * 117.49994 * 214.98026 * 11 9 7 33 33 H 1.09000 * 117.49697 * 359.96996 * 11 9 7 34 34 H 1.09002 * 109.47539 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47120 * 300.00628 * 12 2 1 36 36 H 0.97006 * 119.99837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2347 -0.7486 3.2173 7 6 4.0100 -0.0938 4.1042 8 8 4.3035 1.0674 3.9121 9 6 4.5123 -0.8042 5.3347 10 6 3.9473 -0.3617 6.6860 11 6 5.3863 -0.0059 6.3041 12 6 2.0400 -0.7213 -1.2492 13 6 1.5376 -0.0109 -2.4797 14 1 0.9171 0.8674 -2.3806 15 6 1.8712 -0.4817 -3.7320 16 7 2.6273 -1.5510 -3.8526 17 14 1.2491 0.3993 -5.2572 18 1 2.2275 1.4409 -5.6608 19 1 1.0845 -0.5796 -6.3617 20 1 -0.0591 1.0369 -4.9616 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.7676 -1.7431 1.4037 28 1 3.0004 -1.6773 3.3708 29 1 4.7400 -1.8624 5.2066 30 1 3.2126 0.4434 6.6850 31 1 3.8037 -1.1288 7.4470 32 1 6.1888 -0.5390 6.8139 33 1 5.5984 1.0330 6.0516 34 1 3.1300 -0.7218 -1.2490 35 1 1.6765 -1.7490 -1.2492 36 1 2.8616 -1.8825 -4.7336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755483457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:50 Heat of formation + Delta-G solvation = 13.239292 kcal Electronic energy + Delta-G solvation = -16488.673863 eV Core-core repulsion = 13781.338182 eV Total energy + Delta-G solvation = -2707.335681 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80500 -37.72821 -36.24496 -35.12362 -32.50878 -30.92575 -27.07113 -26.38381 -25.11846 -23.64626 -22.68299 -21.53146 -20.25936 -18.27162 -17.26622 -16.82157 -16.21855 -15.36302 -14.82758 -14.59119 -14.45578 -13.69733 -13.23055 -12.89806 -12.72011 -12.06150 -11.90440 -11.79017 -11.33439 -10.98893 -10.92698 -10.88685 -10.80471 -10.74823 -10.58641 -10.25771 -10.09378 -9.86889 -9.58785 -9.40390 -8.96541 -8.46001 -8.35799 -6.00803 -4.01737 2.11470 2.66395 2.91056 3.33103 3.39778 3.42152 3.67680 4.41831 4.46776 4.53616 4.63187 4.90346 5.17417 5.32378 5.34630 5.38066 5.48553 5.68923 5.88494 5.90310 5.96387 6.07808 6.39467 6.55445 6.66387 6.80983 7.05162 7.10244 7.22400 7.31286 7.60233 7.69378 7.83049 7.97773 8.38371 8.66767 9.02456 9.61507 11.10835 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051658 B = 0.004235 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.898337 B = 6609.861364 C = 6698.604596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.015 4.015 3 C -0.118 4.118 4 C 0.108 3.892 5 N -0.251 5.251 6 N -0.590 5.590 7 C 0.558 3.442 8 O -0.511 6.511 9 C -0.192 4.192 10 C -0.153 4.153 11 C -0.145 4.145 12 C 0.039 3.961 13 C -0.510 4.510 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.379 0.621 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -1.823 17.221 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 C -0.175 4.175 4 C -0.107 4.107 5 N -0.052 5.052 6 N -0.331 5.331 7 C 0.344 3.656 8 O -0.384 6.384 9 C -0.214 4.214 10 C -0.191 4.191 11 C -0.182 4.182 12 C 0.001 3.999 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.054 0.946 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.216 0.784 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.863 -0.283 17.317 17.341 hybrid contribution -0.648 -1.255 -0.951 1.703 sum 0.214 -1.539 16.367 16.440 Atomic orbital electron populations 1.21714 0.93794 1.01350 1.01231 1.19825 0.95292 0.96011 0.90612 1.21602 1.01013 0.94579 1.00352 1.26701 0.92056 0.97545 0.94353 1.74618 1.11964 1.23890 0.94750 1.47072 1.51391 1.13638 1.20961 1.19439 0.77284 0.86569 0.82313 1.90705 1.55677 1.16592 1.75434 1.22157 1.08429 1.00900 0.89964 1.22979 0.97829 1.03556 0.94695 1.22986 0.93711 1.01884 0.99667 1.19138 0.96522 0.95136 0.89072 1.21174 1.31262 1.12131 0.90267 0.91944 1.25000 0.95257 0.95057 0.99111 1.69965 1.37027 1.23101 1.23482 0.86614 0.79278 0.79404 0.82843 1.20712 1.21373 1.19807 0.94636 0.90563 0.93166 0.93030 0.91747 0.94374 0.88234 0.78410 0.85709 0.88135 0.87685 0.87755 0.87220 0.96281 0.96246 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 8.20 37.16 0.30 -1.87 16 2 C -0.01 -0.29 0.75 -155.66 -0.12 -0.41 16 3 C -0.12 -2.41 7.45 37.16 0.28 -2.13 16 4 C 0.11 1.92 9.56 -13.87 -0.13 1.79 16 5 N -0.25 -4.69 9.70 32.67 0.32 -4.37 16 6 N -0.59 -8.95 6.25 31.22 0.20 -8.75 16 7 C 0.56 8.59 7.73 -10.99 -0.08 8.50 16 8 O -0.51 -10.17 16.59 5.54 0.09 -10.08 16 9 C -0.19 -1.95 6.19 -91.77 -0.57 -2.52 16 10 C -0.15 -1.27 10.24 -26.69 -0.27 -1.54 16 11 C -0.15 -1.32 10.05 -26.70 -0.27 -1.59 16 12 C 0.04 0.96 4.02 -27.88 -0.11 0.85 16 13 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 14 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.08 1.43 6.62 -51.93 -0.34 1.09 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 25 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 26 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 27 H 0.10 1.49 8.00 -52.49 -0.42 1.07 16 28 H 0.38 4.28 8.63 -182.59 -1.58 2.71 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.20 7.67 -51.93 -0.40 0.80 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -32.59 306.77 -7.13 -39.71 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.73 Total: -0.56 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.33 Total: -11.23 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 1.25 Total: -38.60 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.59 -7.13 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755483457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds