Wall clock time and date at job start Sun Mar 29 2020 22:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.50706 * 109.46859 * 120.00218 * 2 1 3 5 5 N 1.28009 * 119.99406 * 239.99825 * 4 2 1 6 6 N 1.40105 * 119.99643 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00003 * 179.97438 * 6 5 4 8 8 O 1.21301 * 120.00211 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.53006 * 117.49931 * 248.75175 * 9 7 6 11 11 C 1.52997 * 117.50251 * 180.09239 * 9 7 6 12 12 C 1.52998 * 109.47206 * 239.99600 * 2 1 3 13 13 C 1.50706 * 109.46895 * 60.00174 * 12 2 1 14 14 H 1.07996 * 119.99940 * 0.02562 * 13 12 2 15 15 C 1.37878 * 120.00047 * 179.97438 * 13 12 2 16 16 N 1.31516 * 119.99788 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99993 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00325 * 17 15 13 19 19 H 1.48499 * 109.47134 * 209.99946 * 17 15 13 20 20 H 1.48498 * 109.47118 * 330.00466 * 17 15 13 21 21 H 1.09001 * 109.47000 * 300.00701 * 1 2 3 22 22 H 1.09002 * 109.46917 * 59.99921 * 1 2 3 23 23 H 1.08995 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46857 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47200 * 299.99345 * 3 2 1 26 26 H 1.09000 * 109.46986 * 60.00008 * 3 2 1 27 27 H 1.07995 * 120.00167 * 59.71936 * 4 2 1 28 28 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 29 29 H 1.08998 * 115.55336 * 34.41580 * 9 7 6 30 30 H 1.09001 * 117.49827 * 359.97438 * 10 9 7 31 31 H 1.08998 * 117.49988 * 145.01788 * 10 9 7 32 32 H 1.09000 * 117.49994 * 214.98026 * 11 9 7 33 33 H 1.09000 * 117.49697 * 359.96996 * 11 9 7 34 34 H 1.09002 * 109.47539 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47120 * 300.00628 * 12 2 1 36 36 H 0.97006 * 119.99837 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2347 -0.7486 3.2173 7 6 4.0100 -0.0938 4.1042 8 8 4.3035 1.0674 3.9121 9 6 4.5123 -0.8042 5.3347 10 6 3.9473 -0.3617 6.6860 11 6 5.3863 -0.0059 6.3041 12 6 2.0400 -0.7213 -1.2492 13 6 1.5376 -0.0109 -2.4797 14 1 0.9171 0.8674 -2.3806 15 6 1.8712 -0.4817 -3.7320 16 7 2.6273 -1.5510 -3.8526 17 14 1.2491 0.3993 -5.2572 18 1 2.2275 1.4409 -5.6608 19 1 1.0845 -0.5796 -6.3617 20 1 -0.0591 1.0369 -4.9616 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.7676 -1.7431 1.4037 28 1 3.0004 -1.6773 3.3708 29 1 4.7400 -1.8624 5.2066 30 1 3.2126 0.4434 6.6850 31 1 3.8037 -1.1288 7.4470 32 1 6.1888 -0.5390 6.8139 33 1 5.5984 1.0330 6.0516 34 1 3.1300 -0.7218 -1.2490 35 1 1.6765 -1.7490 -1.2492 36 1 2.8616 -1.8825 -4.7336 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755483457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:50 Heat of formation + Delta-G solvation = -7.892803 kcal Electronic energy + Delta-G solvation = -16489.590220 eV Core-core repulsion = 13781.338182 eV Total energy + Delta-G solvation = -2708.252037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97562 -39.20124 -37.27478 -36.54345 -34.48306 -32.37242 -29.01513 -27.96206 -26.38203 -25.29363 -23.35851 -23.03254 -21.42807 -19.66691 -18.40437 -18.35965 -18.08853 -16.58032 -16.35018 -15.94124 -15.52749 -15.32844 -14.88332 -14.54293 -13.99135 -13.65519 -13.38271 -12.96331 -12.73420 -12.69779 -12.60462 -12.45622 -12.31885 -12.07102 -11.72107 -11.59014 -11.52770 -11.26358 -11.17721 -11.07828 -10.73966 -10.48840 -9.85159 -8.12574 -6.19278 0.81892 1.45003 1.45933 1.50862 1.56421 1.71855 2.47176 2.87695 3.22688 3.48577 3.75893 3.82385 3.94595 4.04771 4.18449 4.33917 4.40161 4.59811 4.72797 4.84799 4.92350 4.99527 5.02434 5.14091 5.15766 5.21490 5.40777 5.50293 5.51728 5.55753 5.76626 5.90353 6.15008 6.31852 6.55252 6.94128 7.45090 7.48065 8.99773 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051658 B = 0.004235 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.898337 B = 6609.861364 C = 6698.604596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 C -0.109 4.109 4 C 0.109 3.891 5 N -0.284 5.284 6 N -0.582 5.582 7 C 0.549 3.451 8 O -0.567 6.567 9 C -0.197 4.197 10 C -0.135 4.135 11 C -0.149 4.149 12 C 0.048 3.952 13 C -0.516 4.516 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.955 3.045 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.259 1.259 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.130 0.870 28 H 0.401 0.599 29 H 0.159 0.841 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.082 0.918 34 H -0.019 1.019 35 H 0.007 0.993 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -2.548 18.796 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.015 4.015 3 C -0.166 4.166 4 C -0.106 4.106 5 N -0.086 5.086 6 N -0.324 5.324 7 C 0.338 3.662 8 O -0.444 6.444 9 C -0.220 4.220 10 C -0.172 4.172 11 C -0.186 4.186 12 C 0.010 3.990 13 C -0.554 4.554 14 H 0.089 0.911 15 C -0.197 4.197 16 N -0.577 5.577 17 Si 0.781 3.219 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.183 1.183 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.241 0.759 29 H 0.177 0.823 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.000 1.000 35 H 0.025 0.975 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.132 -1.028 18.906 18.934 hybrid contribution -0.296 -1.019 -1.361 1.726 sum -0.428 -2.047 17.545 17.669 Atomic orbital electron populations 1.21636 0.91692 1.02356 1.01739 1.19640 0.96967 0.95055 0.89872 1.21489 0.99352 0.95312 1.00469 1.26497 0.92013 0.98599 0.93447 1.74477 1.11936 1.26088 0.96119 1.46993 1.50966 1.14655 1.19767 1.20540 0.76171 0.86199 0.83246 1.90677 1.57673 1.19202 1.76834 1.22237 1.09637 1.02030 0.88050 1.23117 0.96652 1.03659 0.93753 1.23093 0.95326 1.00743 0.99455 1.18948 0.94043 0.94904 0.91104 1.21581 1.30609 1.12136 0.91062 0.91086 1.25859 0.95599 0.95815 1.02436 1.70097 1.38661 1.24840 1.24120 0.85583 0.79185 0.78138 0.78986 1.20698 1.21241 1.18257 0.92289 0.91818 0.91950 0.95441 0.92450 0.93214 0.85259 0.75885 0.82330 0.89614 0.84066 0.84695 0.89904 1.00047 0.97501 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.20 71.98 0.59 -3.33 16 2 C -0.01 -0.50 0.75 -52.93 -0.04 -0.54 16 3 C -0.11 -4.48 7.45 71.98 0.54 -3.95 16 4 C 0.11 3.77 9.56 88.67 0.85 4.62 16 5 N -0.28 -10.51 9.70 -50.46 -0.49 -11.00 16 6 N -0.58 -16.95 6.25 -173.52 -1.08 -18.03 16 7 C 0.55 16.56 7.73 87.66 0.68 17.24 16 8 O -0.57 -23.10 16.59 -3.09 -0.05 -23.15 16 9 C -0.20 -3.54 6.19 -11.54 -0.07 -3.61 16 10 C -0.13 -1.84 10.24 30.62 0.31 -1.52 16 11 C -0.15 -2.41 10.05 30.62 0.31 -2.10 16 12 C 0.05 2.40 4.02 29.85 0.12 2.52 16 13 C -0.52 -27.53 7.65 25.60 0.20 -27.33 16 14 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 15 C 0.00 0.00 5.46 84.65 0.46 0.47 16 16 N -0.94 -55.76 13.29 21.45 0.28 -55.47 16 17 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 2.30 6.62 -2.39 -0.02 2.29 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 25 H 0.06 2.39 6.62 -2.39 -0.02 2.37 16 26 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 27 H 0.13 3.60 8.00 -2.91 -0.02 3.58 16 28 H 0.40 8.16 8.63 -213.32 -1.84 6.31 16 29 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.81 7.67 -2.39 -0.02 1.80 16 34 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -72.86 306.77 3.85 -69.01 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.77 Total: 10.70 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 3.94 Total: -17.53 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.29 Total: -84.50 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.86 3.85 -69.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755483457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.113 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds