Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54758 * 2 1 4 4 C 1.50145 * 123.28013 * 180.11419 * 3 2 1 5 5 N 1.46839 * 110.27883 * 343.21205 * 4 3 2 6 6 C 1.46909 * 110.99825 * 287.54159 * 5 4 3 7 7 C 1.50702 * 109.46606 * 293.94693 * 6 5 4 8 8 O 1.21276 * 120.00177 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99415 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99801 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46887 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00437 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99955 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00250 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46620 * 120.00061 * 15 13 11 18 18 H 1.48494 * 109.47230 * 240.00021 * 15 13 11 19 19 C 1.47241 * 110.20324 * 50.92522 * 5 4 3 20 20 C 1.50297 * 118.55558 * 180.24365 * 2 1 3 21 21 H 1.08993 * 109.47431 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47115 * 119.99816 * 1 2 3 23 23 H 1.08996 * 109.46811 * 239.99130 * 1 2 3 24 24 H 1.08002 * 118.36271 * 0.40391 * 3 2 1 25 25 H 1.08997 * 109.33533 * 103.46105 * 4 3 2 26 26 H 1.09004 * 109.33459 * 223.13055 * 4 3 2 27 27 H 1.08991 * 109.47507 * 53.94955 * 6 5 4 28 28 H 1.09000 * 109.46643 * 173.95350 * 6 5 4 29 29 H 0.97000 * 120.00278 * 0.02562 * 9 7 6 30 30 H 1.09004 * 109.46944 * 299.99853 * 10 9 7 31 31 H 1.09000 * 109.47186 * 60.00417 * 10 9 7 32 32 H 0.96999 * 120.00167 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.63743 * 50.89287 * 19 5 4 34 34 H 1.09004 * 109.63640 * 171.50000 * 19 5 4 35 35 H 1.08995 * 109.56219 * 43.50653 * 20 2 1 36 36 H 1.09003 * 109.24817 * 283.69071 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1274 1.1404 0.0000 4 6 3.6238 1.2643 -0.0025 5 7 4.2404 -0.0083 0.3930 6 6 4.0575 -0.2580 1.8291 7 6 4.8227 0.7721 2.6195 8 8 5.4574 1.6299 2.0432 9 7 4.8016 0.7399 3.9667 10 6 5.5449 1.7415 4.7351 11 6 5.3584 1.4845 6.2082 12 1 4.7470 0.6581 6.5391 13 6 5.9683 2.3045 7.1338 14 7 6.7125 3.3113 6.7309 15 14 5.7366 1.9865 8.9598 16 1 4.8602 0.8027 9.1487 17 1 7.0571 1.7297 9.5889 18 1 5.1089 3.1738 9.5933 19 6 3.6875 -1.1123 -0.4091 20 6 2.2254 -1.3201 -0.0056 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5138 -0.8901 23 1 -0.3633 -0.5140 0.8899 24 1 1.5378 2.0453 0.0067 25 1 3.9619 1.5336 -1.0031 26 1 3.9227 2.0415 0.7009 27 1 2.9982 -0.1930 2.0772 28 1 4.4279 -1.2532 2.0749 29 1 4.2942 0.0535 4.4276 30 1 6.6043 1.6772 4.4867 31 1 5.1738 2.7366 4.4897 32 1 7.1413 3.8884 7.3820 33 1 3.7429 -0.8593 -1.4679 34 1 4.2537 -2.0238 -0.2172 35 1 1.7456 -1.9937 -0.7155 36 1 2.1833 -1.7564 0.9924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756637183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -22.750945 kcal Electronic energy + Delta-G solvation = -16944.941512 eV Core-core repulsion = 14236.045178 eV Total energy + Delta-G solvation = -2708.896335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02708 -38.09506 -34.30097 -33.86088 -32.30382 -30.88954 -29.27031 -27.36155 -26.01004 -23.59472 -22.81815 -21.61402 -19.68597 -17.78728 -16.87690 -16.04158 -15.64943 -15.14420 -15.00597 -14.62722 -14.31227 -14.09320 -13.77706 -13.42088 -12.84852 -12.68151 -12.56156 -11.98037 -11.94331 -11.86801 -11.72142 -11.51591 -11.04200 -10.94149 -10.82790 -10.73364 -10.29544 -9.35909 -8.98732 -8.77302 -8.70024 -8.14855 -7.81473 -6.15211 -4.21875 2.13355 3.24205 3.31185 3.34270 3.44628 3.78431 4.29101 4.46106 4.65865 4.82922 4.99936 5.08486 5.20926 5.37717 5.41466 5.43560 5.47567 5.56026 5.62272 5.67570 5.76410 5.80084 5.86230 5.88707 6.15849 6.50201 6.86202 7.08599 7.15975 7.36006 7.49466 7.55138 7.70449 7.99337 8.67683 8.81859 9.17110 9.45083 10.95098 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039047 B = 0.004807 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.913130 B = 5823.890026 C = 6050.676966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.140 4.140 3 C -0.182 4.182 4 C 0.073 3.927 5 N -0.508 5.508 6 C 0.030 3.970 7 C 0.499 3.501 8 O -0.541 6.541 9 N -0.715 5.715 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.052 3.948 20 C -0.121 4.121 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.389 0.611 30 H 0.027 0.973 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 -9.309 -12.288 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.140 4.140 3 C -0.202 4.202 4 C -0.054 4.054 5 N -0.230 5.230 6 C -0.101 4.101 7 C 0.284 3.716 8 O -0.419 6.419 9 N -0.364 5.364 10 C 0.130 3.870 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.076 4.076 20 C -0.159 4.159 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.221 0.779 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.801 -8.479 -12.702 18.146 hybrid contribution -1.333 -0.460 1.464 2.032 sum -11.134 -8.939 -11.238 18.170 Atomic orbital electron populations 1.20882 0.92502 1.02183 1.01687 1.20911 0.95720 0.94822 1.02571 1.22981 0.98482 0.97569 1.01144 1.21295 0.88040 0.93217 1.02878 1.62386 1.55742 1.02343 1.02488 1.22058 0.99423 0.99592 0.89018 1.20317 0.82238 0.85981 0.83105 1.90621 1.43304 1.38072 1.69871 1.46448 1.51216 1.33436 1.05343 1.19083 0.91742 0.86742 0.89434 1.21274 1.31841 1.14471 0.90460 0.91895 1.24954 0.94753 0.94774 0.99550 1.69987 1.31230 1.16554 1.34531 0.86369 0.78016 0.78211 0.84361 1.19659 1.20787 1.20818 1.22321 0.92014 0.94940 0.98344 1.21047 0.97143 0.95319 1.02409 0.92210 0.92012 0.91937 0.87561 0.89689 0.87578 0.91946 0.88578 0.77886 0.95529 0.95653 0.92522 0.90330 0.90182 0.90704 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.02 36.01 0.36 -0.71 16 2 C -0.14 -1.56 5.23 -100.93 -0.53 -2.09 16 3 C -0.18 -2.31 8.99 -35.96 -0.32 -2.63 16 4 C 0.07 1.08 5.57 -5.28 -0.03 1.05 16 5 N -0.51 -7.48 4.77 -237.55 -1.13 -8.61 16 6 C 0.03 0.46 4.55 -4.97 -0.02 0.44 16 7 C 0.50 10.16 7.43 -10.98 -0.08 10.08 16 8 O -0.54 -13.11 14.42 5.56 0.08 -13.03 16 9 N -0.72 -15.27 5.55 -61.47 -0.34 -15.61 16 10 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 11 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 C 0.05 0.57 6.03 -3.59 -0.02 0.55 16 20 C -0.12 -1.20 5.27 -28.03 -0.15 -1.34 16 21 H 0.06 0.54 7.62 -51.93 -0.40 0.14 16 22 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.11 1.27 7.63 -52.49 -0.40 0.87 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.11 1.90 5.76 -51.93 -0.30 1.60 16 27 H 0.06 0.88 5.99 -51.93 -0.31 0.57 16 28 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 29 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -31.87 293.67 -7.94 -39.81 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.45 Total: 4.07 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.24 Total: -1.43 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.74 Total: -49.76 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.87 -7.94 -39.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756637183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.057 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds