Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54758 * 2 1 4 4 C 1.50145 * 123.28013 * 180.11419 * 3 2 1 5 5 N 1.46839 * 110.27883 * 343.21205 * 4 3 2 6 6 C 1.46909 * 110.99825 * 287.54159 * 5 4 3 7 7 C 1.50702 * 109.46606 * 293.94693 * 6 5 4 8 8 O 1.21276 * 120.00177 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99415 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99801 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46887 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00437 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99955 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00250 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46982 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46620 * 120.00061 * 15 13 11 18 18 H 1.48494 * 109.47230 * 240.00021 * 15 13 11 19 19 C 1.47241 * 110.20324 * 50.92522 * 5 4 3 20 20 C 1.50297 * 118.55558 * 180.24365 * 2 1 3 21 21 H 1.08993 * 109.47431 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47115 * 119.99816 * 1 2 3 23 23 H 1.08996 * 109.46811 * 239.99130 * 1 2 3 24 24 H 1.08002 * 118.36271 * 0.40391 * 3 2 1 25 25 H 1.08997 * 109.33533 * 103.46105 * 4 3 2 26 26 H 1.09004 * 109.33459 * 223.13055 * 4 3 2 27 27 H 1.08991 * 109.47507 * 53.94955 * 6 5 4 28 28 H 1.09000 * 109.46643 * 173.95350 * 6 5 4 29 29 H 0.97000 * 120.00278 * 0.02562 * 9 7 6 30 30 H 1.09004 * 109.46944 * 299.99853 * 10 9 7 31 31 H 1.09000 * 109.47186 * 60.00417 * 10 9 7 32 32 H 0.96999 * 120.00167 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.63743 * 50.89287 * 19 5 4 34 34 H 1.09004 * 109.63640 * 171.50000 * 19 5 4 35 35 H 1.08995 * 109.56219 * 43.50653 * 20 2 1 36 36 H 1.09003 * 109.24817 * 283.69071 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1274 1.1404 0.0000 4 6 3.6238 1.2643 -0.0025 5 7 4.2404 -0.0083 0.3930 6 6 4.0575 -0.2580 1.8291 7 6 4.8227 0.7721 2.6195 8 8 5.4574 1.6299 2.0432 9 7 4.8016 0.7399 3.9667 10 6 5.5449 1.7415 4.7351 11 6 5.3584 1.4845 6.2082 12 1 4.7470 0.6581 6.5391 13 6 5.9683 2.3045 7.1338 14 7 6.7125 3.3113 6.7309 15 14 5.7366 1.9865 8.9598 16 1 4.8602 0.8027 9.1487 17 1 7.0571 1.7297 9.5889 18 1 5.1089 3.1738 9.5933 19 6 3.6875 -1.1123 -0.4091 20 6 2.2254 -1.3201 -0.0056 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5138 -0.8901 23 1 -0.3633 -0.5140 0.8899 24 1 1.5378 2.0453 0.0067 25 1 3.9619 1.5336 -1.0031 26 1 3.9227 2.0415 0.7009 27 1 2.9982 -0.1930 2.0772 28 1 4.4279 -1.2532 2.0749 29 1 4.2942 0.0535 4.4276 30 1 6.6043 1.6772 4.4867 31 1 5.1738 2.7366 4.4897 32 1 7.1413 3.8884 7.3820 33 1 3.7429 -0.8593 -1.4679 34 1 4.2537 -2.0238 -0.2172 35 1 1.7456 -1.9937 -0.7155 36 1 2.1833 -1.7564 0.9924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756637183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = -46.503172 kcal Electronic energy + Delta-G solvation = -16945.971486 eV Core-core repulsion = 14236.045178 eV Total energy + Delta-G solvation = -2709.926308 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25790 -39.59269 -36.13975 -34.99117 -34.33996 -31.81664 -30.66942 -28.94627 -27.27174 -24.75668 -24.46569 -22.84561 -21.37683 -19.22032 -18.29177 -17.68728 -16.96082 -16.85410 -16.33098 -16.04723 -15.62596 -15.25861 -15.11273 -14.48028 -14.38101 -14.06652 -13.88548 -13.50885 -13.42227 -12.95045 -12.89551 -12.76010 -12.69170 -12.46747 -12.22014 -12.06257 -11.61732 -11.45187 -10.81092 -10.65017 -9.81709 -9.68731 -9.21946 -8.29065 -6.45773 1.22113 1.43247 1.44581 1.58063 1.80795 2.29058 2.49071 3.05896 3.12381 3.81716 3.92158 3.95448 4.18464 4.23347 4.34844 4.37882 4.59485 4.65738 4.75154 4.79068 4.83699 4.95924 5.00781 5.04752 5.11829 5.16009 5.24691 5.49961 5.62476 5.70495 5.85402 5.91143 6.08899 6.12378 6.65815 6.95689 7.24005 7.53943 8.83529 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039047 B = 0.004807 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.913130 B = 5823.890026 C = 6050.676966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 C -0.209 4.209 4 C 0.079 3.921 5 N -0.531 5.531 6 C 0.048 3.952 7 C 0.494 3.506 8 O -0.586 6.586 9 N -0.710 5.710 10 C 0.268 3.732 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.052 3.948 20 C -0.120 4.120 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.407 0.593 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.269 0.731 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 -12.215 -11.786 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.125 4.125 3 C -0.229 4.229 4 C -0.049 4.049 5 N -0.253 5.253 6 C -0.082 4.082 7 C 0.281 3.719 8 O -0.466 6.466 9 N -0.361 5.361 10 C 0.145 3.855 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.176 1.176 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.075 4.075 20 C -0.158 4.158 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.243 0.757 30 H 0.004 0.996 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.864 -11.434 -12.223 20.516 hybrid contribution -0.697 0.448 1.193 1.453 sum -12.561 -10.986 -11.030 20.003 Atomic orbital electron populations 1.20931 0.90885 1.02530 1.02974 1.21276 0.96969 0.94822 0.99423 1.22808 0.97064 0.98523 1.04509 1.21036 0.89759 0.92463 1.01606 1.62344 1.57055 1.03423 1.02510 1.21941 0.99184 0.98466 0.88651 1.21384 0.81566 0.86298 0.82677 1.90606 1.45240 1.40146 1.70627 1.46185 1.51107 1.32912 1.05866 1.18509 0.89857 0.86447 0.90681 1.21655 1.32077 1.15117 0.90414 0.89776 1.26083 0.94026 0.94191 1.05344 1.70151 1.32412 1.17861 1.36652 0.85096 0.78255 0.78684 0.77083 1.17559 1.20423 1.20478 1.22443 0.93047 0.94051 0.97966 1.21112 0.96106 0.94880 1.03701 0.92503 0.90199 0.90952 0.87774 0.89697 0.91861 0.90245 0.85484 0.75727 0.99612 0.99733 0.92265 0.89852 0.88377 0.88064 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.02 71.24 0.71 -1.07 16 2 C -0.12 -2.45 5.23 -15.41 -0.08 -2.53 16 3 C -0.21 -5.18 8.99 26.68 0.24 -4.94 16 4 C 0.08 2.39 5.57 85.39 0.48 2.87 16 5 N -0.53 -15.08 4.77 -905.46 -4.32 -19.40 16 6 C 0.05 1.38 4.55 85.56 0.39 1.77 16 7 C 0.49 20.48 7.43 87.66 0.65 21.13 16 8 O -0.59 -29.99 14.42 -3.02 -0.04 -30.03 16 9 N -0.71 -30.73 5.55 -466.78 -2.59 -33.32 16 10 C 0.27 15.04 5.43 85.63 0.46 15.50 16 11 C -0.55 -30.54 9.28 25.60 0.24 -30.30 16 12 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.17 5.46 84.66 0.46 0.63 16 14 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 15 Si 0.99 42.56 29.54 68.60 2.03 44.59 16 16 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 19 C 0.05 0.99 6.03 86.27 0.52 1.51 16 20 C -0.12 -1.89 5.27 29.75 0.16 -1.73 16 21 H 0.06 0.91 7.62 -2.39 -0.02 0.89 16 22 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.10 2.54 7.63 -2.91 -0.02 2.51 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 2.44 5.76 -2.39 -0.01 2.42 16 27 H 0.08 2.03 5.99 -2.39 -0.01 2.01 16 28 H 0.13 2.87 8.09 -2.39 -0.02 2.85 16 29 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 30 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.24 7.13 -2.39 -0.02 1.22 16 Total: -1.00 -72.60 293.67 -0.11 -72.72 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.30 Total: 19.25 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.23 Total: 2.84 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -6.62 Total: -109.36 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.04 Total: -30.03 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.60 -0.11 -72.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756637183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.214 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds