Wall clock time and date at job start Sun Mar 29 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00221 * 2 1 4 4 N 1.46900 * 109.47593 * 124.83545 * 3 2 1 5 5 C 1.46902 * 110.99793 * 291.32592 * 4 3 2 6 6 C 1.50703 * 109.47052 * 169.99393 * 5 4 3 7 7 O 1.21281 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99824 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46988 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00163 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99910 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99797 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00033 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47145 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46817 * 120.00454 * 14 12 10 17 17 H 1.48497 * 109.46769 * 239.99986 * 14 12 10 18 18 C 1.46898 * 111.00110 * 167.36943 * 4 3 2 19 19 C 1.52998 * 117.50045 * 4.84381 * 18 4 3 20 20 C 1.52994 * 117.50255 * 296.21614 * 18 4 3 21 21 H 1.07998 * 120.00031 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.99821 * 179.71959 * 1 2 3 23 23 H 1.08009 * 120.00502 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47573 * 244.83942 * 3 2 1 25 25 H 1.09005 * 109.46888 * 4.83530 * 3 2 1 26 26 H 1.08996 * 109.47329 * 289.99880 * 5 4 3 27 27 H 1.08996 * 109.47100 * 49.99777 * 5 4 3 28 28 H 0.97003 * 120.00246 * 0.02562 * 8 6 5 29 29 H 1.09002 * 109.46851 * 300.00638 * 9 8 6 30 30 H 1.08996 * 109.47026 * 60.00590 * 9 8 6 31 31 H 0.97004 * 120.00081 * 180.02562 * 13 12 10 32 32 H 1.09004 * 115.54246 * 150.54885 * 18 4 3 33 33 H 1.09000 * 117.49863 * 359.97438 * 19 18 4 34 34 H 1.08996 * 117.49903 * 145.01921 * 19 18 4 35 35 H 1.08995 * 117.50419 * 214.98297 * 20 18 4 36 36 H 1.09001 * 117.49667 * 359.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9935 1.3336 1.1368 5 6 2.2658 1.4135 2.4104 6 6 3.2252 1.1942 3.5517 7 8 4.3996 0.9919 3.3264 8 7 2.7783 1.2240 4.8228 9 6 3.7110 1.0115 5.9324 10 6 2.9645 1.0933 7.2389 11 1 1.9015 1.2841 7.2424 12 6 3.6383 0.9235 8.4297 13 7 4.9327 0.6906 8.4254 14 14 2.7128 1.0242 10.0492 15 1 1.2769 1.2929 9.7829 16 1 2.8484 -0.2629 10.7776 17 1 3.2776 2.1219 10.8746 18 6 3.9501 2.4408 1.0066 19 6 3.7594 3.4051 -0.1658 20 6 4.9164 2.4040 -0.1790 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0046 23 1 1.8501 -0.9353 -0.0004 24 1 2.6236 1.4013 -0.9302 25 1 1.3583 2.1317 0.0866 26 1 1.8067 2.3975 2.5055 27 1 1.4910 0.6472 2.4348 28 1 1.8390 1.3862 5.0031 29 1 4.1702 0.0274 5.8376 30 1 4.4857 1.7778 5.9077 31 1 5.4068 0.5708 9.2632 32 1 4.3198 2.8552 1.9446 33 1 2.9243 3.2177 -0.8408 34 1 4.0036 4.4543 0.0006 35 1 5.9217 2.7945 -0.0213 36 1 4.8425 1.5580 -0.8623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772381084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:23 Heat of formation + Delta-G solvation = 18.615831 kcal Electronic energy + Delta-G solvation = -16719.339226 eV Core-core repulsion = 14012.236690 eV Total energy + Delta-G solvation = -2707.102537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56579 -37.93066 -34.98533 -34.12089 -32.52948 -32.22871 -28.40383 -26.70199 -24.74623 -22.44250 -22.33132 -20.63036 -19.83369 -19.34159 -17.27112 -16.44583 -16.02168 -15.46580 -14.98845 -14.88666 -14.29024 -14.11823 -13.76615 -13.16090 -12.76326 -12.66706 -12.30046 -11.90818 -11.88087 -11.56355 -11.41772 -11.10669 -10.94095 -10.89187 -10.54997 -10.30497 -10.28137 -9.53123 -9.36111 -8.94910 -8.71806 -8.05733 -7.82325 -6.15476 -4.22182 2.10912 3.24047 3.31037 3.34114 3.43568 3.63421 3.99524 4.23202 4.40835 4.83064 4.91084 4.95285 5.08561 5.16266 5.20699 5.28360 5.42602 5.54855 5.57128 5.63286 5.66103 5.83151 5.94189 6.02535 6.16825 6.49599 6.54436 7.05483 7.08232 7.35307 7.48844 7.54775 7.70087 7.99023 8.67236 8.81618 9.16747 9.44829 10.94811 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032444 B = 0.004897 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.827363 B = 5716.069783 C = 6288.522270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.076 3.924 4 N -0.486 5.486 5 C 0.036 3.964 6 C 0.497 3.503 7 O -0.536 6.536 8 N -0.716 5.716 9 C 0.251 3.749 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.040 3.960 19 C -0.229 4.229 20 C -0.167 4.167 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.389 0.611 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.265 0.735 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 3.043 -16.146 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.051 4.051 4 N -0.207 5.207 5 C -0.095 4.095 6 C 0.281 3.719 7 O -0.414 6.414 8 N -0.365 5.365 9 C 0.130 3.870 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.069 4.069 19 C -0.268 4.268 20 C -0.205 4.205 21 H 0.112 0.888 22 H 0.118 0.882 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.221 0.779 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.763 2.407 -16.143 17.667 hybrid contribution -1.308 0.785 1.045 1.849 sum -8.071 3.192 -15.098 17.415 Atomic orbital electron populations 1.23858 0.95818 1.01863 1.01754 1.22966 0.95547 0.98808 0.98716 1.21394 0.94148 0.94767 0.94782 1.61415 1.15992 1.42721 1.00585 1.22041 0.96232 1.01969 0.89240 1.20281 0.89208 0.78407 0.84014 1.90671 1.17476 1.48796 1.84418 1.46451 1.12965 1.70956 1.06174 1.19077 0.88646 0.97204 0.82025 1.21273 0.95153 1.51036 0.90583 0.91880 1.24955 0.94903 0.94737 0.99443 1.69989 1.07582 1.47442 1.27298 0.86368 0.79783 0.77782 0.83020 1.19646 1.20796 1.20817 1.22604 0.97862 0.92155 0.94263 1.23649 1.01807 0.96978 1.04409 1.22966 0.95018 1.00764 1.01708 0.88777 0.88247 0.86649 0.89459 0.94001 0.92269 0.88132 0.77879 0.95565 0.95660 0.92522 0.85841 0.88624 0.88990 0.88566 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 14.32 29.02 0.42 -1.36 16 2 C -0.14 -1.51 8.63 -36.03 -0.31 -1.82 16 3 C 0.08 0.85 4.04 -4.98 -0.02 0.83 16 4 N -0.49 -7.07 4.42 -229.52 -1.01 -8.08 16 5 C 0.04 0.54 5.30 -4.97 -0.03 0.51 16 6 C 0.50 10.04 7.32 -10.99 -0.08 9.96 16 7 O -0.54 -13.01 14.88 5.56 0.08 -12.93 16 8 N -0.72 -15.17 5.55 -61.47 -0.34 -15.51 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.69 16 10 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 11 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 14 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.04 0.59 5.17 -67.72 -0.35 0.24 16 19 C -0.23 -2.57 9.51 -26.73 -0.25 -2.82 16 20 C -0.17 -2.09 9.99 -26.73 -0.27 -2.36 16 21 H 0.09 0.77 7.84 -52.49 -0.41 0.36 16 22 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 23 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 24 H 0.09 0.91 6.05 -51.93 -0.31 0.60 16 25 H 0.04 0.43 7.50 -51.93 -0.39 0.04 16 26 H 0.06 0.78 8.12 -51.93 -0.42 0.35 16 27 H 0.10 1.35 7.12 -51.93 -0.37 0.98 16 28 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 2.11 6.74 -51.93 -0.35 1.76 16 33 H 0.10 0.95 5.89 -51.93 -0.31 0.64 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -31.73 303.39 -7.70 -39.43 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.38 Total: 5.73 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.34 Total: -3.57 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.62 Total: -49.11 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.73 -7.70 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772381084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.043 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds