Wall clock time and date at job start Sun Mar 29 2020 21:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47143 * 270.00351 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00442 * 3 2 1 6 6 H 1.48507 * 109.46873 * 150.00329 * 3 2 1 7 7 C 1.37875 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00682 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99834 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99818 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99634 * 179.97438 * 11 10 9 14 14 C 1.47421 * 125.65086 * 354.79972 * 13 11 10 15 15 C 1.54910 * 104.83027 * 204.09056 * 14 13 11 16 16 C 1.55156 * 101.58144 * 322.98500 * 15 14 13 17 17 C 1.47321 * 125.61376 * 174.57134 * 13 11 10 18 18 H 1.08997 * 109.84648 * 59.58095 * 17 13 11 19 19 C 1.53005 * 110.05956 * 298.32326 * 17 13 11 20 20 C 1.53002 * 117.49657 * 255.55386 * 19 17 13 21 21 C 1.53003 * 117.49457 * 186.89723 * 19 17 13 22 22 H 0.96997 * 120.00252 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47112 * 60.00098 * 9 7 2 24 24 H 1.09001 * 109.47379 * 300.00205 * 9 7 2 25 25 H 0.96996 * 120.00430 * 0.02562 * 10 9 7 26 26 H 1.08996 * 110.37276 * 85.25070 * 14 13 11 27 27 H 1.09007 * 110.36732 * 322.92223 * 14 13 11 28 28 H 1.09000 * 111.00178 * 204.91370 * 15 14 13 29 29 H 1.09003 * 111.00655 * 81.06349 * 15 14 13 30 30 H 1.09007 * 110.71677 * 153.86740 * 16 15 14 31 31 H 1.08995 * 110.72214 * 276.96374 * 16 15 14 32 32 H 1.08993 * 115.55339 * 41.23101 * 19 17 13 33 33 H 1.09006 * 117.49946 * 0.02562 * 20 19 17 34 34 H 1.08997 * 117.49922 * 145.02227 * 20 19 17 35 35 H 1.09000 * 117.49797 * 214.97418 * 21 19 17 36 36 H 1.08997 * 117.50360 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0009 12 8 6.1150 -1.8974 -0.0005 13 7 5.7742 -4.0923 -0.0003 14 6 4.9358 -5.2999 0.1089 15 6 5.8809 -6.3889 0.6752 16 6 7.2152 -6.0448 -0.0381 17 6 7.1842 -4.5038 -0.1135 18 1 7.7604 -4.0806 0.7094 19 6 7.7615 -4.0365 -1.4512 20 6 7.9519 -5.0895 -2.5448 21 6 9.1689 -4.5119 -1.8178 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3126 -0.0010 26 1 4.5637 -5.5936 -0.8726 27 1 4.1057 -5.1249 0.7935 28 1 5.5369 -7.3860 0.4005 29 1 5.9807 -6.2958 1.7566 30 1 8.0665 -6.3851 0.5516 31 1 7.2416 -6.4794 -1.0373 32 1 7.4720 -3.0332 -1.7634 33 1 7.6655 -6.1150 -2.3114 34 1 7.7879 -4.7788 -3.5766 35 1 9.8050 -3.8214 -2.3717 36 1 9.6836 -5.1571 -1.1059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:55 Heat of formation + Delta-G solvation = 4.276012 kcal Electronic energy + Delta-G solvation = -17199.516452 eV Core-core repulsion = 14491.792095 eV Total energy + Delta-G solvation = -2707.724358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17081 -38.02202 -35.88468 -34.20090 -32.35549 -31.23544 -28.84850 -27.54106 -24.10010 -22.69074 -22.09814 -21.81807 -20.04170 -18.98866 -17.83744 -16.53635 -16.38244 -15.76444 -15.00947 -14.56711 -14.36136 -13.97977 -13.48341 -13.00132 -12.93748 -12.69161 -12.43270 -12.29002 -11.97957 -11.65553 -11.30906 -10.98283 -10.92638 -10.73962 -10.61673 -10.41184 -9.93197 -9.91212 -9.49210 -9.40037 -8.74277 -8.44317 -7.89876 -6.18108 -4.19655 3.07073 3.30204 3.36918 3.46198 3.80216 3.87570 4.36840 4.41176 4.51449 4.78738 4.80490 4.88649 4.96994 5.04413 5.17647 5.23980 5.30601 5.52412 5.60402 5.67025 5.74386 5.82378 5.91735 5.98015 6.06101 6.19791 6.27635 6.59014 6.86317 7.15656 7.32474 7.45814 7.66021 8.30286 8.72342 8.84118 9.26463 9.44414 10.93939 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036342 B = 0.005763 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.279246 B = 4857.204058 C = 5321.044201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.714 3.286 12 O -0.599 6.599 13 N -0.638 5.638 14 C 0.100 3.900 15 C -0.130 4.130 16 C -0.145 4.145 17 C 0.190 3.810 18 H 0.075 0.925 19 C -0.155 4.155 20 C -0.190 4.190 21 C -0.175 4.175 22 H 0.267 0.733 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.392 0.608 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.997 -14.396 -1.298 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.416 3.584 12 O -0.479 6.479 13 N -0.377 5.377 14 C -0.024 4.024 15 C -0.168 4.168 16 C -0.182 4.182 17 C 0.085 3.915 18 H 0.093 0.907 19 C -0.175 4.175 20 C -0.226 4.226 21 C -0.212 4.212 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.225 0.775 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.330 -13.442 -1.281 19.689 hybrid contribution -0.072 0.592 -0.077 0.602 sum 14.258 -12.849 -1.358 19.241 Atomic orbital electron populations 1.69880 1.06198 1.27377 1.49681 1.24772 0.94775 0.99127 0.93907 0.86817 0.80630 0.83205 0.79054 1.19867 1.20936 1.18429 1.21091 0.88562 0.95162 1.53067 0.90352 1.19359 0.94800 0.77688 0.96595 1.45430 1.03630 1.10971 1.77324 1.15642 0.83514 0.81127 0.78158 1.90856 1.55479 1.42302 1.59214 1.47688 1.06990 1.04016 1.79033 1.22217 0.94333 0.85157 1.00650 1.22731 0.94998 0.98474 1.00574 1.23072 0.98281 0.94514 1.02336 1.20769 0.82070 0.93269 0.95378 0.90664 1.22708 0.98775 0.99964 0.96021 1.23255 1.02836 0.99089 0.97418 1.22887 0.90870 1.03829 1.03660 0.92303 0.95953 0.96404 0.77494 0.91758 0.90713 0.90019 0.90669 0.90308 0.89104 0.86909 0.87809 0.89199 0.88983 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.54 -15.19 9.83 -34.44 -0.34 -15.53 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 6.12 4.50 -5.19 -0.02 6.10 16 10 N -0.72 -15.75 5.51 -66.41 -0.37 -16.11 16 11 C 0.71 15.05 8.17 -86.91 -0.71 14.34 16 12 O -0.60 -14.79 15.80 5.29 0.08 -14.70 16 13 N -0.64 -10.22 3.08 -168.47 -0.52 -10.74 16 14 C 0.10 1.21 6.47 -2.53 -0.02 1.19 16 15 C -0.13 -1.17 7.09 -24.58 -0.17 -1.34 16 16 C -0.14 -1.33 5.89 -24.90 -0.15 -1.48 16 17 C 0.19 2.55 3.25 -66.79 -0.22 2.33 16 18 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.16 -2.11 5.70 -90.61 -0.52 -2.62 16 20 C -0.19 -2.00 9.72 -26.69 -0.26 -2.26 16 21 C -0.17 -1.82 9.97 -26.69 -0.27 -2.09 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 24 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 25 H 0.39 7.65 6.93 -40.82 -0.28 7.36 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.09 0.76 4.58 -51.93 -0.24 0.52 16 32 H 0.11 1.95 7.26 -51.93 -0.38 1.57 16 33 H 0.10 0.92 5.24 -51.93 -0.27 0.65 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 LS Contribution 290.10 15.07 4.37 4.37 Total: -1.00 -32.88 290.10 -8.37 -41.25 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.28 Total: 4.02 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.77 Total: 0.78 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.11 Total: -52.94 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.88 -8.37 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.529 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds