Wall clock time and date at job start Sun Mar 29 2020 21:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47143 * 270.00351 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00442 * 3 2 1 6 6 H 1.48507 * 109.46873 * 150.00329 * 3 2 1 7 7 C 1.37875 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00682 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99834 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99818 * 180.02562 * 10 9 7 12 12 O 1.21586 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99634 * 179.97438 * 11 10 9 14 14 C 1.47421 * 125.65086 * 354.79972 * 13 11 10 15 15 C 1.54910 * 104.83027 * 204.09056 * 14 13 11 16 16 C 1.55156 * 101.58144 * 322.98500 * 15 14 13 17 17 C 1.47321 * 125.61376 * 174.57134 * 13 11 10 18 18 H 1.08997 * 109.84648 * 59.58095 * 17 13 11 19 19 C 1.53005 * 110.05956 * 298.32326 * 17 13 11 20 20 C 1.53002 * 117.49657 * 255.55386 * 19 17 13 21 21 C 1.53003 * 117.49457 * 186.89723 * 19 17 13 22 22 H 0.96997 * 120.00252 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47112 * 60.00098 * 9 7 2 24 24 H 1.09001 * 109.47379 * 300.00205 * 9 7 2 25 25 H 0.96996 * 120.00430 * 0.02562 * 10 9 7 26 26 H 1.08996 * 110.37276 * 85.25070 * 14 13 11 27 27 H 1.09007 * 110.36732 * 322.92223 * 14 13 11 28 28 H 1.09000 * 111.00178 * 204.91370 * 15 14 13 29 29 H 1.09003 * 111.00655 * 81.06349 * 15 14 13 30 30 H 1.09007 * 110.71677 * 153.86740 * 16 15 14 31 31 H 1.08995 * 110.72214 * 276.96374 * 16 15 14 32 32 H 1.08993 * 115.55339 * 41.23101 * 19 17 13 33 33 H 1.09006 * 117.49946 * 0.02562 * 20 19 17 34 34 H 1.08997 * 117.49922 * 145.02227 * 20 19 17 35 35 H 1.09000 * 117.49797 * 214.97418 * 21 19 17 36 36 H 1.08997 * 117.50360 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0009 12 8 6.1150 -1.8974 -0.0005 13 7 5.7742 -4.0923 -0.0003 14 6 4.9358 -5.2999 0.1089 15 6 5.8809 -6.3889 0.6752 16 6 7.2152 -6.0448 -0.0381 17 6 7.1842 -4.5038 -0.1135 18 1 7.7604 -4.0806 0.7094 19 6 7.7615 -4.0365 -1.4512 20 6 7.9519 -5.0895 -2.5448 21 6 9.1689 -4.5119 -1.8178 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3126 -0.0010 26 1 4.5637 -5.5936 -0.8726 27 1 4.1057 -5.1249 0.7935 28 1 5.5369 -7.3860 0.4005 29 1 5.9807 -6.2958 1.7566 30 1 8.0665 -6.3851 0.5516 31 1 7.2416 -6.4794 -1.0373 32 1 7.4720 -3.0332 -1.7634 33 1 7.6655 -6.1150 -2.3114 34 1 7.7879 -4.7788 -3.5766 35 1 9.8050 -3.8214 -2.3717 36 1 9.6836 -5.1571 -1.1059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:55 Heat of formation + Delta-G solvation = -18.225359 kcal Electronic energy + Delta-G solvation = -17200.492185 eV Core-core repulsion = 14491.792095 eV Total energy + Delta-G solvation = -2708.700090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45882 -39.39041 -36.92722 -36.15839 -34.42460 -32.47449 -30.08820 -29.24834 -25.36390 -23.94553 -23.45209 -22.87742 -21.40989 -20.45634 -19.25592 -18.35033 -17.60085 -17.00634 -16.63406 -16.31676 -15.79594 -15.26579 -14.87677 -14.50722 -14.39532 -14.08628 -13.94585 -13.50966 -13.29212 -13.01926 -12.72432 -12.44677 -12.11559 -11.94327 -11.88332 -11.67864 -11.43930 -11.35673 -11.13409 -10.93670 -10.80663 -10.12468 -9.42182 -8.41893 -6.48748 1.31127 1.32720 1.46781 1.70508 2.17023 2.26972 2.92800 2.93440 3.17834 3.65070 3.69318 3.90456 4.01247 4.05796 4.17509 4.36615 4.42997 4.64330 4.72047 4.74380 4.84421 4.98522 5.00196 5.02997 5.10027 5.11686 5.20340 5.25368 5.26997 5.43158 5.52394 5.56037 6.03375 6.23984 6.52358 7.09134 7.18128 7.63771 8.72900 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036342 B = 0.005763 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.279246 B = 4857.204058 C = 5321.044201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.253 3.747 10 N -0.722 5.722 11 C 0.708 3.292 12 O -0.643 6.643 13 N -0.633 5.633 14 C 0.087 3.913 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.181 3.819 18 H 0.056 0.944 19 C -0.190 4.190 20 C -0.172 4.172 21 C -0.157 4.157 22 H 0.273 0.727 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.402 0.598 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.451 -16.589 -1.428 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.376 5.376 11 C 0.410 3.590 12 O -0.526 6.526 13 N -0.371 5.371 14 C -0.035 4.035 15 C -0.156 4.156 16 C -0.168 4.168 17 C 0.078 3.922 18 H 0.074 0.926 19 C -0.210 4.210 20 C -0.208 4.208 21 C -0.194 4.194 22 H 0.083 0.917 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.237 0.763 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.789 -15.711 -1.414 22.319 hybrid contribution -0.523 1.200 -0.051 1.310 sum 15.266 -14.511 -1.464 21.113 Atomic orbital electron populations 1.69968 1.07558 1.28671 1.50566 1.25541 0.95542 1.02498 0.93479 0.85874 0.79198 0.79427 0.79494 1.18967 1.19388 1.18836 1.21232 0.89654 0.94640 1.52830 0.92310 1.18938 0.93221 0.79715 0.95266 1.45161 1.04512 1.09838 1.78047 1.15793 0.82649 0.82590 0.77962 1.90810 1.56288 1.44441 1.61042 1.47757 1.09123 1.03247 1.76987 1.22581 0.94772 0.84535 1.01635 1.22751 0.93684 0.98632 1.00494 1.23084 0.99417 0.90451 1.03801 1.21056 0.80058 0.96462 0.94668 0.92554 1.22502 1.02247 0.98741 0.97509 1.23372 1.01924 0.99233 0.96259 1.23006 0.89713 1.03344 1.03379 0.91730 0.97389 0.97595 0.76274 0.90602 0.91084 0.86635 0.90540 0.87708 0.87511 0.91931 0.85152 0.89527 0.89033 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 2 C 0.03 1.74 5.47 84.65 0.46 2.20 16 3 Si 0.94 45.51 27.47 68.60 1.88 47.39 16 4 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.92 6.54 99.48 0.65 -12.27 16 7 C -0.55 -31.33 9.83 25.60 0.25 -31.08 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.50 16 9 C 0.25 13.34 4.50 85.63 0.38 13.72 16 10 N -0.72 -32.38 5.51 -482.28 -2.66 -35.04 16 11 C 0.71 30.78 8.17 179.05 1.46 32.25 16 12 O -0.64 -33.19 15.80 -3.99 -0.06 -33.26 16 13 N -0.63 -20.19 3.08 -805.17 -2.48 -22.67 16 14 C 0.09 1.94 6.47 86.86 0.56 2.50 16 15 C -0.12 -1.66 7.09 31.99 0.23 -1.43 16 16 C -0.13 -1.88 5.89 31.78 0.19 -1.69 16 17 C 0.18 4.68 3.25 45.28 0.15 4.82 16 18 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 19 C -0.19 -5.11 5.70 -10.79 -0.06 -5.17 16 20 C -0.17 -3.20 9.72 30.62 0.30 -2.90 16 21 C -0.16 -2.93 9.97 30.62 0.31 -2.62 16 22 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 23 H 0.01 0.45 7.20 -2.39 -0.02 0.44 16 24 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 25 H 0.40 16.03 6.93 -92.71 -0.64 15.39 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.64 7.51 -2.38 -0.02 1.62 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.11 1.22 4.58 -2.39 -0.01 1.21 16 32 H 0.06 2.31 7.26 -2.39 -0.02 2.30 16 33 H 0.13 1.72 5.24 -2.38 -0.01 1.71 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.12 1.63 8.05 -2.39 -0.02 1.61 16 Total: -1.00 -74.01 290.10 1.59 -72.42 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.38 Total: 16.58 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 4.23 Total: 10.59 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.83 Total: -113.73 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.06 Total: -33.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.39 kcal Total: -74.01 1.59 -72.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.195 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds