Wall clock time and date at job start Sun Mar 29 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 C 1.53000 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00335 * 4 3 2 6 6 C 1.53002 * 109.47233 * 65.00509 * 4 3 2 7 7 C 1.50703 * 109.46912 * 185.00257 * 4 3 2 8 8 N 1.29947 * 126.28670 * 299.68702 * 7 4 3 9 9 O 1.21297 * 110.25214 * 179.84346 * 8 7 4 10 10 C 1.33648 * 109.80810 * 0.42964 * 9 8 7 11 11 C 1.50699 * 126.54747 * 179.76054 * 10 9 8 12 12 C 1.53007 * 109.46952 * 269.97010 * 11 10 9 13 13 C 1.50701 * 109.46949 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99494 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99396 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00283 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47002 * 90.00377 * 17 15 13 19 19 H 1.48504 * 109.47071 * 210.00375 * 17 15 13 20 20 H 1.48492 * 109.47023 * 330.00138 * 17 15 13 21 21 N 1.31126 * 106.89779 * 359.73223 * 10 9 8 22 22 H 1.09002 * 109.47069 * 299.99434 * 1 2 3 23 23 H 1.09001 * 109.47624 * 59.99715 * 1 2 3 24 24 H 1.09002 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47069 * 240.00566 * 2 1 3 26 26 H 1.09001 * 109.47624 * 120.00284 * 2 1 3 27 27 H 1.09002 * 109.46824 * 60.00417 * 3 2 1 28 28 H 1.08991 * 109.47210 * 300.00501 * 3 2 1 29 29 H 1.09002 * 109.47075 * 59.99068 * 6 4 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 6 4 3 32 32 H 1.08997 * 109.47776 * 29.96949 * 11 10 9 33 33 H 1.08998 * 109.47187 * 149.97653 * 11 10 9 34 34 H 1.08997 * 109.46830 * 300.00519 * 12 11 10 35 35 H 1.08998 * 109.46650 * 60.00314 * 12 11 10 36 36 H 0.96998 * 119.99677 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8329 -1.3065 7 6 4.0722 2.8580 0.1245 8 7 3.8398 3.8318 -0.7039 9 8 4.3821 4.8471 -0.3212 10 6 5.0394 4.6079 0.8176 11 6 5.8457 5.6011 1.6140 12 6 7.2971 5.5848 1.1299 13 6 8.1036 6.5776 1.9267 14 1 7.6285 7.1621 2.7007 15 6 9.4478 6.7405 1.6669 16 7 10.1515 7.6073 2.3620 17 14 10.2695 5.7300 0.3278 18 1 10.1856 6.4583 -0.9636 19 1 11.6952 5.5083 0.6794 20 1 9.5810 4.4203 0.2032 21 7 4.8481 3.3440 1.1097 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.7174 1.4222 -2.1485 30 1 5.1705 0.8324 -1.3058 31 1 3.7173 -0.1909 -1.3961 32 1 5.4290 6.5992 1.4789 33 1 5.8120 5.3331 2.6699 34 1 7.7139 4.5868 1.2649 35 1 7.3309 5.8528 0.0739 36 1 11.0973 7.7216 2.1795 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812809851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:34 Heat of formation + Delta-G solvation = 30.054242 kcal Electronic energy + Delta-G solvation = -16521.338830 eV Core-core repulsion = 13814.732300 eV Total energy + Delta-G solvation = -2706.606530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.20589 -37.49690 -35.39947 -34.37280 -32.73301 -31.69760 -30.24350 -26.90145 -26.21447 -24.67038 -23.03701 -21.77288 -20.93612 -19.64270 -17.70588 -17.25134 -16.75079 -15.61184 -14.91875 -14.53472 -14.38098 -14.06396 -13.70911 -13.38200 -12.85775 -12.76959 -12.34350 -12.25380 -12.01875 -11.86298 -11.56049 -11.33237 -11.10431 -11.08189 -11.00147 -10.75400 -10.63624 -10.41629 -10.19832 -9.89743 -9.37352 -9.35487 -8.63157 -6.13860 -4.14377 1.52023 2.55751 3.26631 3.27294 3.34698 3.38590 3.78781 4.29571 4.37894 4.65992 4.70812 4.80947 5.00600 5.10336 5.20081 5.22485 5.42572 5.45598 5.57247 5.62260 5.69760 5.73079 5.87385 5.89821 5.94603 6.01441 6.09334 6.11537 6.15425 6.36451 6.46164 7.01972 7.15549 7.61298 8.38208 8.52420 8.88295 9.46881 10.98801 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.004488 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.484325 B = 6236.864847 C = 6496.956282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.002 3.998 5 H 0.099 0.901 6 C -0.146 4.146 7 C 0.169 3.831 8 N -0.395 5.395 9 O 0.067 5.933 10 C 0.207 3.793 11 C -0.019 4.019 12 C -0.007 4.007 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.495 5.495 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 -13.308 -5.433 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.018 4.018 5 H 0.117 0.883 6 C -0.204 4.204 7 C -0.104 4.104 8 N -0.106 5.106 9 O 0.011 5.989 10 C -0.012 4.012 11 C -0.058 4.058 12 C -0.046 4.046 13 C -0.563 4.563 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.228 5.228 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.705 -13.678 -5.886 21.642 hybrid contribution 0.723 -0.249 -0.608 0.977 sum -14.982 -13.927 -6.494 21.461 Atomic orbital electron populations 1.21767 0.95737 1.01558 1.01921 1.21572 0.95954 0.96225 1.02391 1.21652 0.92870 0.97524 1.02878 1.19529 0.95649 0.86017 1.00573 0.88263 1.21879 1.01532 1.00957 0.95991 1.25746 0.97078 0.98940 0.88660 1.74500 1.18776 0.94411 1.22875 1.85280 1.48233 1.30610 1.34752 1.29632 0.92339 0.93412 0.85847 1.20525 0.94645 0.93381 0.97275 1.19618 0.89234 0.98622 0.97104 1.20934 0.93849 1.21603 1.19922 0.90355 1.24947 0.97234 0.94829 0.95969 1.69892 1.08135 1.34914 1.40572 0.86824 0.78881 0.81439 0.82497 1.20073 1.21108 1.19064 1.71944 1.17782 1.07107 1.26016 0.92728 0.92728 0.92703 0.91498 0.91705 0.91717 0.91202 0.91928 0.92284 0.91117 0.88530 0.87660 0.95595 0.96300 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.11 -1.16 4.67 -26.73 -0.12 -1.28 16 4 C 0.00 0.03 2.86 -91.77 -0.26 -0.23 16 5 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.15 -1.58 8.93 37.16 0.33 -1.25 16 7 C 0.17 2.79 6.72 -156.37 -1.05 1.73 16 8 N -0.40 -6.90 12.16 30.90 0.38 -6.53 16 9 O 0.07 1.22 11.31 18.09 0.20 1.42 16 10 C 0.21 3.80 7.77 -13.06 -0.10 3.70 16 11 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 12 C -0.01 -0.17 4.02 -27.88 -0.11 -0.28 16 13 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 14 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 17 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 21 N -0.50 -9.17 11.55 -9.87 -0.11 -9.28 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 34 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 35 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -30.09 302.44 -6.25 -36.34 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -5.69 Total: -4.50 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.70 Total: -12.62 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.04 Total: -41.88 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.09 -6.25 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812809851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.396 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds