Wall clock time and date at job start Sun Mar 29 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 C 1.53000 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00335 * 4 3 2 6 6 C 1.53002 * 109.47233 * 65.00509 * 4 3 2 7 7 C 1.50703 * 109.46912 * 185.00257 * 4 3 2 8 8 N 1.29947 * 126.28670 * 299.68702 * 7 4 3 9 9 O 1.21297 * 110.25214 * 179.84346 * 8 7 4 10 10 C 1.33648 * 109.80810 * 0.42964 * 9 8 7 11 11 C 1.50699 * 126.54747 * 179.76054 * 10 9 8 12 12 C 1.53007 * 109.46952 * 269.97010 * 11 10 9 13 13 C 1.50701 * 109.46949 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99494 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99396 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00283 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47002 * 90.00377 * 17 15 13 19 19 H 1.48504 * 109.47071 * 210.00375 * 17 15 13 20 20 H 1.48492 * 109.47023 * 330.00138 * 17 15 13 21 21 N 1.31126 * 106.89779 * 359.73223 * 10 9 8 22 22 H 1.09002 * 109.47069 * 299.99434 * 1 2 3 23 23 H 1.09001 * 109.47624 * 59.99715 * 1 2 3 24 24 H 1.09002 * 109.46642 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47069 * 240.00566 * 2 1 3 26 26 H 1.09001 * 109.47624 * 120.00284 * 2 1 3 27 27 H 1.09002 * 109.46824 * 60.00417 * 3 2 1 28 28 H 1.08991 * 109.47210 * 300.00501 * 3 2 1 29 29 H 1.09002 * 109.47075 * 59.99068 * 6 4 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 6 4 3 32 32 H 1.08997 * 109.47776 * 29.96949 * 11 10 9 33 33 H 1.08998 * 109.47187 * 149.97653 * 11 10 9 34 34 H 1.08997 * 109.46830 * 300.00519 * 12 11 10 35 35 H 1.08998 * 109.46650 * 60.00314 * 12 11 10 36 36 H 0.96998 * 119.99677 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8329 -1.3065 7 6 4.0722 2.8580 0.1245 8 7 3.8398 3.8318 -0.7039 9 8 4.3821 4.8471 -0.3212 10 6 5.0394 4.6079 0.8176 11 6 5.8457 5.6011 1.6140 12 6 7.2971 5.5848 1.1299 13 6 8.1036 6.5776 1.9267 14 1 7.6285 7.1621 2.7007 15 6 9.4478 6.7405 1.6669 16 7 10.1515 7.6073 2.3620 17 14 10.2695 5.7300 0.3278 18 1 10.1856 6.4583 -0.9636 19 1 11.6952 5.5083 0.6794 20 1 9.5810 4.4203 0.2032 21 7 4.8481 3.3440 1.1097 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.7174 1.4222 -2.1485 30 1 5.1705 0.8324 -1.3058 31 1 3.7173 -0.1909 -1.3961 32 1 5.4290 6.5992 1.4789 33 1 5.8120 5.3331 2.6699 34 1 7.7139 4.5868 1.2649 35 1 7.3309 5.8528 0.0739 36 1 11.0973 7.7216 2.1795 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812809851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:33 Heat of formation + Delta-G solvation = 11.406167 kcal Electronic energy + Delta-G solvation = -16522.147471 eV Core-core repulsion = 13814.732300 eV Total energy + Delta-G solvation = -2707.415171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.57979 -38.47112 -36.85448 -35.84453 -34.38700 -32.93848 -31.71777 -28.03477 -27.68028 -25.75581 -24.50037 -23.07063 -22.20309 -20.80804 -19.23158 -18.91737 -18.35441 -16.43642 -16.34729 -16.00937 -15.76168 -15.20685 -15.07252 -14.75383 -14.35705 -13.69722 -13.65966 -13.62079 -13.10334 -12.91838 -12.80976 -12.73567 -12.47858 -12.27757 -12.07729 -11.93827 -11.79567 -11.78611 -11.70195 -11.46788 -11.43044 -10.78973 -10.77263 -8.30485 -6.35024 0.11235 1.21031 1.35050 1.37473 1.47354 1.84028 2.34178 2.60176 3.05053 3.05585 3.73578 3.88368 3.89870 4.18448 4.29053 4.31002 4.38853 4.41817 4.51789 4.69266 4.73569 4.80933 4.82347 4.88885 4.92248 5.01014 5.07926 5.17446 5.22444 5.25994 5.34631 5.38242 5.45335 5.56659 6.22288 6.72441 7.14083 7.29598 8.85302 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.004488 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.484325 B = 6236.864847 C = 6496.956282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.001 4.001 5 H 0.107 0.893 6 C -0.141 4.141 7 C 0.172 3.828 8 N -0.404 5.404 9 O 0.060 5.940 10 C 0.204 3.796 11 C -0.009 4.009 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.257 1.257 21 N -0.511 5.511 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.019 0.981 35 H 0.023 0.977 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.371 -15.323 -6.577 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.021 4.021 5 H 0.125 0.875 6 C -0.199 4.199 7 C -0.101 4.101 8 N -0.116 5.116 9 O 0.006 5.994 10 C -0.015 4.015 11 C -0.048 4.048 12 C -0.041 4.041 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.181 1.181 21 N -0.245 5.245 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.642 -15.683 -7.036 23.925 hybrid contribution 0.939 0.384 -0.201 1.034 sum -15.703 -15.299 -7.238 23.087 Atomic orbital electron populations 1.21773 0.95221 1.02333 1.01711 1.21559 0.96360 0.94432 1.03305 1.21605 0.91411 0.99197 1.02022 1.19831 0.96825 0.83728 1.01722 0.87516 1.21870 1.00793 1.02494 0.94694 1.26511 0.95828 1.00299 0.87500 1.74499 1.19287 0.94545 1.23280 1.85269 1.48417 1.31053 1.34620 1.29431 0.92660 0.93389 0.86028 1.20306 0.92344 0.94666 0.97491 1.19470 0.91269 0.96747 0.96649 1.21252 0.94289 1.21671 1.19379 0.92908 1.25807 0.98163 0.96026 0.98365 1.70022 1.08638 1.36955 1.42683 0.85827 0.77878 0.80181 0.79812 1.19068 1.20737 1.18112 1.71963 1.18402 1.07240 1.26919 0.93120 0.92836 0.91438 0.90299 0.91036 0.92754 0.91905 0.92640 0.93374 0.88047 0.86816 0.87053 0.96244 0.95871 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.59 5.69 30.60 0.17 -1.42 16 3 C -0.10 -1.97 4.67 30.60 0.14 -1.83 16 4 C 0.00 -0.02 2.86 -11.54 -0.03 -0.06 16 5 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 6 C -0.14 -2.72 8.93 71.98 0.64 -2.08 16 7 C 0.17 5.43 6.72 138.46 0.93 6.36 16 8 N -0.40 -13.67 12.16 -60.32 -0.73 -14.40 16 9 O 0.06 2.10 11.31 74.79 0.85 2.95 16 10 C 0.20 7.28 7.77 88.38 0.69 7.97 16 11 C -0.01 -0.33 5.78 29.85 0.17 -0.16 16 12 C 0.00 -0.12 4.02 29.85 0.12 0.00 16 13 C -0.53 -28.71 9.66 25.60 0.25 -28.46 16 14 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 15 C 0.01 0.82 5.47 84.65 0.46 1.28 16 16 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 17 Si 0.94 43.61 27.47 68.60 1.88 45.49 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 21 N -0.51 -18.30 11.55 -303.20 -3.50 -21.80 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.88 6.57 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.33 6.57 -2.39 -0.02 1.31 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 35 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -63.76 302.44 4.04 -59.72 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 0.99 Total: 4.55 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.26 Total: -19.57 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -3.94 Total: -93.14 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.85 Total: 2.95 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -63.76 4.04 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812809851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.124 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds