Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99743 * 2 1 4 4 H 1.48493 * 109.47382 * 240.00192 * 3 2 1 5 5 H 1.48496 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46966 * 120.00270 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99959 * 0.27722 * 7 2 1 10 10 N 1.46499 * 109.47368 * 179.72326 * 9 7 2 11 11 C 1.34777 * 120.00349 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.46907 * 109.46582 * 174.40670 * 13 11 10 15 15 C 1.47159 * 111.00209 * 303.68186 * 14 13 11 16 16 C 1.53194 * 108.43453 * 199.74333 * 15 14 13 17 17 C 1.52972 * 109.52955 * 305.53344 * 16 15 14 18 18 H 1.08998 * 115.50980 * 232.29176 * 17 16 15 19 19 C 1.53599 * 115.77634 * 89.42721 * 17 16 15 20 20 C 1.52359 * 59.75099 * 249.47638 * 19 17 16 21 21 H 1.08990 * 115.77216 * 253.07193 * 20 19 17 22 22 C 1.46732 * 110.99732 * 66.78686 * 14 13 11 23 23 H 0.97000 * 120.00186 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47111 * 299.72259 * 9 7 2 25 25 H 1.09002 * 109.47706 * 59.72158 * 9 7 2 26 26 H 0.97003 * 119.99754 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.47294 * 294.40608 * 13 11 10 28 28 H 1.09003 * 109.47292 * 54.41593 * 13 11 10 29 29 H 1.08993 * 109.62036 * 319.32505 * 15 14 13 30 30 H 1.09008 * 109.61523 * 79.86364 * 15 14 13 31 31 H 1.09002 * 109.15194 * 185.72306 * 16 15 14 32 32 H 1.09012 * 109.84550 * 65.76501 * 16 15 14 33 33 H 1.08999 * 117.52335 * 142.05685 * 19 17 16 34 34 H 1.09003 * 117.52467 * 356.90012 * 19 17 16 35 35 H 1.09003 * 109.30470 * 300.46998 * 22 14 13 36 36 H 1.08999 * 109.30553 * 59.85368 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 7 2.2031 -3.6126 -0.0133 11 6 1.7539 -4.8833 -0.0195 12 8 0.5615 -5.1050 -0.0207 13 6 2.7333 -6.0286 -0.0261 14 7 2.0039 -7.2973 0.1029 15 6 1.1687 -7.3046 1.3145 16 6 0.8379 -8.7585 1.6661 17 6 0.2036 -9.4458 0.4556 18 1 -0.7457 -9.9470 0.6445 19 6 1.1812 -10.1245 -0.5154 20 6 0.4283 -8.8689 -0.9370 21 1 -0.3769 -9.0182 -1.6562 22 6 1.1817 -7.5542 -1.0849 23 1 -0.4850 0.8400 0.0004 24 1 0.6244 -2.5616 0.8823 25 1 0.6244 -2.5522 -0.8977 26 1 3.1568 -3.4353 -0.0127 27 1 3.2914 -6.0240 -0.9623 28 1 3.4246 -5.9205 0.8097 29 1 1.7147 -6.8449 2.1382 30 1 0.2484 -6.7509 1.1279 31 1 0.1370 -8.7740 2.5008 32 1 1.7485 -9.2874 1.9478 33 1 0.8731 -11.0702 -0.9613 34 1 2.2468 -10.0271 -0.3075 35 1 0.4664 -6.7413 -1.2108 36 1 1.8242 -7.6040 -1.9640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852633690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -12.297359 kcal Electronic energy + Delta-G solvation = -17080.203318 eV Core-core repulsion = 14371.760285 eV Total energy + Delta-G solvation = -2708.443033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07846 -38.30605 -34.94075 -34.00706 -32.38480 -31.11623 -28.68763 -26.76725 -24.62352 -23.17555 -22.08961 -21.23071 -19.78200 -18.50875 -17.05702 -16.40025 -15.71486 -15.38472 -15.14776 -14.59854 -14.48146 -13.96547 -13.64954 -13.31411 -12.59477 -12.41474 -12.21860 -12.00913 -11.87935 -11.58726 -11.14616 -11.02160 -11.01766 -10.81969 -10.42318 -10.31822 -9.94308 -9.66265 -9.56898 -9.43926 -8.75296 -7.91455 -7.81041 -6.19154 -4.26559 3.23394 3.27563 3.28374 3.29794 3.79721 4.09328 4.11782 4.36357 4.73840 4.92849 5.05280 5.16719 5.19841 5.36802 5.49455 5.50984 5.63472 5.66067 5.73289 5.81261 5.93569 6.08933 6.12305 6.16248 6.29727 6.32012 6.50790 7.10713 7.19972 7.27703 7.40884 7.47727 7.63176 7.94134 8.57830 8.73830 9.04892 9.40243 10.90915 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062886 B = 0.004504 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.143215 B = 6215.103359 C = 6279.260347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.710 5.710 11 C 0.465 3.535 12 O -0.555 6.555 13 C 0.031 3.969 14 N -0.512 5.512 15 C 0.039 3.961 16 C -0.081 4.081 17 C -0.147 4.147 18 H 0.097 0.903 19 C -0.174 4.174 20 C -0.137 4.137 21 H 0.099 0.901 22 C 0.067 3.933 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.391 0.609 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.838 -15.828 0.311 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.358 5.358 11 C 0.249 3.751 12 O -0.435 6.435 13 C -0.101 4.101 14 N -0.234 5.234 15 C -0.088 4.088 16 C -0.119 4.119 17 C -0.165 4.165 18 H 0.115 0.885 19 C -0.211 4.211 20 C -0.156 4.156 21 H 0.117 0.883 22 C -0.061 4.061 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.223 0.777 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.159 -16.224 0.350 16.752 hybrid contribution 0.265 1.726 -0.138 1.751 sum 4.424 -14.498 0.212 15.160 Atomic orbital electron populations 1.69961 1.06143 1.27449 1.48768 1.24956 0.94908 0.99478 0.94631 0.86469 0.79423 0.82278 0.78718 1.20041 1.21047 1.20037 1.21196 0.93227 0.90506 1.53412 0.91949 1.19081 0.88365 0.82144 0.97577 1.46614 1.11133 1.06485 1.71612 1.21801 0.90354 0.85313 0.77624 1.90584 1.17100 1.84468 1.51369 1.22324 0.96360 0.87000 1.04410 1.62696 1.28426 1.28854 1.03452 1.22399 0.98424 0.96258 0.91750 1.21147 0.99810 0.95359 0.95586 1.22223 0.99617 1.03498 0.91197 0.88518 1.23058 0.98496 0.95454 1.04072 1.21921 1.01669 0.94305 0.97698 0.88309 1.21616 0.96229 0.95831 0.92397 0.92375 0.95667 0.95678 0.77675 0.88288 0.88257 0.91620 0.90688 0.91677 0.91455 0.89799 0.88212 0.90811 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.55 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.56 5.43 -5.20 -0.03 6.54 16 10 N -0.71 -14.60 5.55 -61.47 -0.34 -14.94 16 11 C 0.47 8.90 7.20 -10.99 -0.08 8.82 16 12 O -0.55 -12.59 11.74 5.56 0.07 -12.52 16 13 C 0.03 0.44 5.78 -4.97 -0.03 0.41 16 14 N -0.51 -7.34 4.66 -236.34 -1.10 -8.44 16 15 C 0.04 0.58 4.69 -3.58 -0.02 0.57 16 16 C -0.08 -1.00 6.09 -26.65 -0.16 -1.16 16 17 C -0.15 -1.78 6.28 -90.63 -0.57 -2.35 16 18 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.17 -1.94 9.76 -26.75 -0.26 -2.20 16 20 C -0.14 -1.76 6.08 -91.64 -0.56 -2.32 16 21 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 22 C 0.07 0.98 5.14 -4.30 -0.02 0.96 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.95 7.95 -51.93 -0.41 0.53 16 30 H 0.07 1.37 5.91 -51.92 -0.31 1.06 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.78 8.07 -51.92 -0.42 0.36 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.32 5.72 -51.93 -0.30 1.02 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -30.71 290.53 -8.96 -39.67 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.53 Total: 5.58 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.14 Total: -4.11 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.71 Total: -48.74 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.71 -8.96 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852633690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.371 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds