Wall clock time and date at job start Sun Mar 29 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99743 * 2 1 4 4 H 1.48493 * 109.47382 * 240.00192 * 3 2 1 5 5 H 1.48496 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46966 * 120.00270 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99959 * 0.27722 * 7 2 1 10 10 N 1.46499 * 109.47368 * 179.72326 * 9 7 2 11 11 C 1.34777 * 120.00349 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99735 * 179.97438 * 11 10 9 14 14 N 1.46907 * 109.46582 * 174.40670 * 13 11 10 15 15 C 1.47159 * 111.00209 * 303.68186 * 14 13 11 16 16 C 1.53194 * 108.43453 * 199.74333 * 15 14 13 17 17 C 1.52972 * 109.52955 * 305.53344 * 16 15 14 18 18 H 1.08998 * 115.50980 * 232.29176 * 17 16 15 19 19 C 1.53599 * 115.77634 * 89.42721 * 17 16 15 20 20 C 1.52359 * 59.75099 * 249.47638 * 19 17 16 21 21 H 1.08990 * 115.77216 * 253.07193 * 20 19 17 22 22 C 1.46732 * 110.99732 * 66.78686 * 14 13 11 23 23 H 0.97000 * 120.00186 * 359.97438 * 1 2 3 24 24 H 1.09010 * 109.47111 * 299.72259 * 9 7 2 25 25 H 1.09002 * 109.47706 * 59.72158 * 9 7 2 26 26 H 0.97003 * 119.99754 * 359.97438 * 10 9 7 27 27 H 1.08996 * 109.47294 * 294.40608 * 13 11 10 28 28 H 1.09003 * 109.47292 * 54.41593 * 13 11 10 29 29 H 1.08993 * 109.62036 * 319.32505 * 15 14 13 30 30 H 1.09008 * 109.61523 * 79.86364 * 15 14 13 31 31 H 1.09002 * 109.15194 * 185.72306 * 16 15 14 32 32 H 1.09012 * 109.84550 * 65.76501 * 16 15 14 33 33 H 1.08999 * 117.52335 * 142.05685 * 19 17 16 34 34 H 1.09003 * 117.52467 * 356.90012 * 19 17 16 35 35 H 1.09003 * 109.30470 * 300.46998 * 22 14 13 36 36 H 1.08999 * 109.30553 * 59.85368 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 7 2.2031 -3.6126 -0.0133 11 6 1.7539 -4.8833 -0.0195 12 8 0.5615 -5.1050 -0.0207 13 6 2.7333 -6.0286 -0.0261 14 7 2.0039 -7.2973 0.1029 15 6 1.1687 -7.3046 1.3145 16 6 0.8379 -8.7585 1.6661 17 6 0.2036 -9.4458 0.4556 18 1 -0.7457 -9.9470 0.6445 19 6 1.1812 -10.1245 -0.5154 20 6 0.4283 -8.8689 -0.9370 21 1 -0.3769 -9.0182 -1.6562 22 6 1.1817 -7.5542 -1.0849 23 1 -0.4850 0.8400 0.0004 24 1 0.6244 -2.5616 0.8823 25 1 0.6244 -2.5522 -0.8977 26 1 3.1568 -3.4353 -0.0127 27 1 3.2914 -6.0240 -0.9623 28 1 3.4246 -5.9205 0.8097 29 1 1.7147 -6.8449 2.1382 30 1 0.2484 -6.7509 1.1279 31 1 0.1370 -8.7740 2.5008 32 1 1.7485 -9.2874 1.9478 33 1 0.8731 -11.0702 -0.9613 34 1 2.2468 -10.0271 -0.3075 35 1 0.4664 -6.7413 -1.2108 36 1 1.8242 -7.6040 -1.9640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852633690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:35 Heat of formation + Delta-G solvation = -34.542126 kcal Electronic energy + Delta-G solvation = -17081.167923 eV Core-core repulsion = 14371.760285 eV Total energy + Delta-G solvation = -2709.407639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40054 -39.65125 -36.43171 -35.60894 -34.38407 -32.20216 -30.27789 -28.43631 -25.87769 -24.70874 -23.64596 -22.17627 -21.43887 -19.73489 -18.78266 -17.58997 -17.46560 -16.86259 -16.64375 -16.11856 -15.95595 -15.38411 -14.92617 -14.61708 -14.22795 -14.05907 -13.74552 -13.36154 -13.21395 -12.94007 -12.78325 -12.67108 -12.25773 -12.14261 -12.08130 -11.54396 -11.48529 -11.31146 -10.82101 -10.78806 -10.56012 -9.80983 -9.16934 -8.30976 -6.48337 1.41823 1.45849 1.54134 1.72400 2.31622 2.61750 2.80159 2.99323 3.03654 3.75144 3.93579 3.99478 4.07349 4.21006 4.35952 4.42927 4.55778 4.57409 4.65408 4.82631 4.92991 5.03743 5.05527 5.08428 5.13113 5.18608 5.21018 5.34892 5.44048 5.48717 5.68937 5.83018 5.95762 6.00443 6.63119 6.89651 7.21643 7.48910 8.80749 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062886 B = 0.004504 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.143215 B = 6215.103359 C = 6279.260347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.707 5.707 11 C 0.461 3.539 12 O -0.593 6.593 13 C 0.041 3.959 14 N -0.499 5.499 15 C 0.039 3.961 16 C -0.077 4.077 17 C -0.157 4.157 18 H 0.107 0.893 19 C -0.149 4.149 20 C -0.158 4.158 21 H 0.102 0.898 22 C 0.068 3.932 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.017 1.017 26 H 0.409 0.591 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 -16.791 0.417 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.357 5.357 11 C 0.248 3.752 12 O -0.476 6.476 13 C -0.090 4.090 14 N -0.221 5.221 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.176 4.176 18 H 0.125 0.875 19 C -0.186 4.186 20 C -0.176 4.176 21 H 0.120 0.880 22 C -0.059 4.059 23 H 0.077 0.923 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.244 0.756 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.051 0.949 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.847 -17.230 0.456 18.546 hybrid contribution -0.623 1.957 -0.175 2.062 sum 6.224 -15.272 0.281 16.495 Atomic orbital electron populations 1.70133 1.08354 1.28636 1.49961 1.26084 0.95749 1.03986 0.93776 0.85204 0.77913 0.76534 0.79561 1.18590 1.21135 1.18580 1.21613 0.94334 0.90642 1.52973 0.89754 1.18472 0.88748 0.84646 0.93671 1.46367 1.11150 1.05823 1.72382 1.22910 0.90807 0.85788 0.75719 1.90599 1.19488 1.85006 1.52478 1.22522 0.95185 0.84121 1.07193 1.62814 1.27922 1.28186 1.03171 1.22357 0.96702 0.97742 0.92067 1.21134 1.00748 0.93483 0.96060 1.22350 1.00671 1.03767 0.90769 0.87502 1.23076 0.98121 0.95096 1.02288 1.21927 1.02598 0.94414 0.98683 0.87980 1.21559 0.95749 0.95611 0.93019 0.92268 0.99862 0.99895 0.75565 0.85400 0.85203 0.91275 0.94794 0.90863 0.89970 0.87794 0.88181 0.94893 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.56 -30.39 9.28 25.60 0.24 -30.16 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.77 5.43 85.63 0.46 15.24 16 10 N -0.71 -29.41 5.55 -466.79 -2.59 -32.00 16 11 C 0.46 17.89 7.20 87.66 0.63 18.52 16 12 O -0.59 -28.44 11.74 -3.03 -0.04 -28.48 16 13 C 0.04 1.09 5.78 85.56 0.49 1.58 16 14 N -0.50 -13.61 4.66 -901.65 -4.20 -17.81 16 15 C 0.04 1.15 4.69 86.32 0.40 1.56 16 16 C -0.08 -1.76 6.09 30.65 0.19 -1.58 16 17 C -0.16 -3.54 6.28 -10.80 -0.07 -3.61 16 18 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 19 C -0.15 -2.90 9.76 30.58 0.30 -2.60 16 20 C -0.16 -3.88 6.08 -11.45 -0.07 -3.95 16 21 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 22 C 0.07 1.98 5.14 86.09 0.44 2.42 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 27 H 0.13 2.71 8.11 -2.39 -0.02 2.69 16 28 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.07 1.94 7.95 -2.39 -0.02 1.92 16 30 H 0.03 1.29 5.91 -2.38 -0.01 1.28 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.67 8.07 -2.38 -0.02 1.65 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.03 1.23 5.72 -2.39 -0.01 1.22 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.09 290.53 -0.73 -70.82 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.30 Total: 21.46 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 3.49 Total: -1.91 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -6.51 Total: -106.18 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.04 Total: -28.48 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -70.09 -0.73 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852633690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.277 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds