Wall clock time and date at job start Sun Mar 29 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00301 * 2 1 4 4 H 1.48502 * 109.46848 * 269.99837 * 3 2 1 5 5 H 1.48498 * 109.46928 * 29.99479 * 3 2 1 6 6 H 1.48501 * 109.47544 * 149.99435 * 3 2 1 7 7 C 1.37884 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00141 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99997 * 180.27349 * 10 9 7 12 12 O 1.21276 * 119.99642 * 359.73327 * 11 10 9 13 13 C 1.50697 * 119.99787 * 179.72982 * 11 10 9 14 14 N 1.46910 * 109.46872 * 174.40490 * 13 11 10 15 15 C 1.47167 * 110.99744 * 303.68871 * 14 13 11 16 16 C 1.52092 * 109.49777 * 198.66975 * 15 14 13 17 17 C 1.52381 * 110.31831 * 306.93520 * 16 15 14 18 18 H 1.08999 * 114.97503 * 164.97187 * 17 16 15 19 19 C 1.50895 * 119.18170 * 308.96881 * 17 16 15 20 20 C 1.52402 * 118.99278 * 19.80441 * 17 16 15 21 21 H 1.08997 * 117.39051 * 143.73835 * 20 17 16 22 22 C 1.46747 * 111.00046 * 66.77343 * 14 13 11 23 23 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47140 * 60.00351 * 9 7 2 25 25 H 1.08993 * 109.47524 * 300.00511 * 9 7 2 26 26 H 0.97003 * 120.00532 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.46958 * 294.40001 * 13 11 10 28 28 H 1.08996 * 109.47601 * 54.40154 * 13 11 10 29 29 H 1.09000 * 109.61159 * 319.32836 * 15 14 13 30 30 H 1.09001 * 109.61350 * 79.85379 * 15 14 13 31 31 H 1.08999 * 110.15054 * 186.07801 * 16 15 14 32 32 H 1.09002 * 108.27543 * 66.60659 * 16 15 14 33 33 H 1.08999 * 117.27277 * 1.28007 * 19 17 16 34 34 H 1.08998 * 117.58904 * 216.42075 * 19 17 16 35 35 H 1.09007 * 109.35875 * 300.73215 * 22 14 13 36 36 H 1.08997 * 109.36141 * 60.32584 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0085 12 8 6.1129 -1.8998 0.0083 13 6 5.8271 -4.2424 0.0158 14 7 7.2905 -4.2452 -0.1134 15 6 7.7142 -3.5259 -1.3253 16 6 9.1377 -3.9262 -1.6816 17 6 10.0564 -3.7384 -0.4805 18 1 11.0244 -4.2331 -0.5597 19 6 10.0531 -2.4175 0.2490 20 6 9.4441 -3.6615 0.9130 21 1 10.0020 -4.1161 1.7317 22 6 7.9243 -3.6607 1.0741 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8912 25 1 3.8752 -0.6805 -0.8887 26 1 3.3694 -3.3127 0.0021 27 1 5.5441 -4.7230 0.9524 28 1 5.3876 -4.7875 -0.8195 29 1 7.0429 -3.7694 -2.1488 30 1 7.6948 -2.4521 -1.1392 31 1 9.5008 -3.3218 -2.5128 32 1 9.1345 -4.9762 -1.9740 33 1 9.3664 -1.6507 -0.1095 34 1 11.0040 -2.0533 0.6380 35 1 7.5750 -2.6361 1.2028 36 1 7.6537 -4.2456 1.9531 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852633691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:37 Heat of formation + Delta-G solvation = -8.363832 kcal Electronic energy + Delta-G solvation = -17222.503763 eV Core-core repulsion = 14514.231300 eV Total energy + Delta-G solvation = -2708.272463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28484 -38.49909 -35.07358 -34.14429 -32.41826 -31.22453 -29.03290 -27.14713 -24.78880 -23.22014 -21.76355 -21.27979 -19.98411 -18.53480 -17.20284 -16.50002 -15.99650 -15.46855 -15.33875 -14.65122 -14.29803 -14.28879 -13.77653 -13.39333 -12.77105 -12.63371 -12.49907 -12.31883 -12.13390 -11.39276 -11.25103 -11.05137 -10.98329 -10.78396 -10.53452 -10.05297 -9.99556 -9.79421 -9.72839 -9.52668 -8.81424 -8.19521 -7.89104 -6.25071 -4.27529 3.11145 3.23316 3.30055 3.37841 3.70723 3.98042 4.10175 4.29748 4.73583 4.81857 4.99839 5.09079 5.10607 5.21210 5.34223 5.38054 5.56294 5.60687 5.73647 5.78791 5.91319 5.93759 6.01172 6.08462 6.24763 6.32536 6.39003 6.74498 7.01903 7.05213 7.11242 7.19007 7.35371 8.08026 8.46325 8.70491 8.86276 9.34982 10.86898 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.005339 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.635243 B = 5243.373388 C = 5530.950530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.703 5.703 11 C 0.467 3.533 12 O -0.558 6.558 13 C 0.031 3.969 14 N -0.508 5.508 15 C 0.036 3.964 16 C -0.082 4.082 17 C -0.132 4.132 18 H 0.095 0.905 19 C -0.185 4.185 20 C -0.143 4.143 21 H 0.103 0.897 22 C 0.066 3.934 23 H 0.268 0.732 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.397 0.603 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.351 -8.821 -0.428 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.351 5.351 11 C 0.252 3.748 12 O -0.439 6.439 13 C -0.101 4.101 14 N -0.230 5.230 15 C -0.092 4.092 16 C -0.120 4.120 17 C -0.150 4.150 18 H 0.113 0.887 19 C -0.223 4.223 20 C -0.161 4.161 21 H 0.121 0.879 22 C -0.062 4.062 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.231 0.769 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.877 -8.527 -0.465 18.914 hybrid contribution -0.327 1.382 0.110 1.424 sum 16.550 -7.145 -0.355 18.030 Atomic orbital electron populations 1.69878 1.06211 1.27450 1.49340 1.24799 0.94782 0.99158 0.93843 0.86815 0.80526 0.83290 0.79020 1.19870 1.20848 1.18633 1.21099 0.88535 0.95232 1.53397 0.90238 1.19472 0.95279 0.78909 0.96611 1.46349 1.06048 1.11044 1.71672 1.21902 0.83359 0.92345 0.77244 1.90568 1.54966 1.46778 1.51555 1.22339 0.89316 0.93676 1.04748 1.62696 1.04227 1.52761 1.03320 1.22179 0.95689 0.99220 0.92080 1.20770 0.93683 1.01736 0.95831 1.21581 0.99848 1.00519 0.93073 0.88703 1.22979 1.02610 0.91939 1.04728 1.22227 0.95265 1.02326 0.96322 0.87917 1.21834 0.91356 1.00545 0.92435 0.92227 0.95851 0.96300 0.76937 0.88003 0.87992 0.91325 0.91153 0.91434 0.91416 0.88441 0.89287 0.90948 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.86 9.83 -34.44 -0.34 -15.20 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.35 4.50 -5.20 -0.02 5.33 16 10 N -0.70 -13.81 5.55 -61.48 -0.34 -14.15 16 11 C 0.47 8.45 7.20 -10.98 -0.08 8.37 16 12 O -0.56 -11.81 11.74 5.56 0.07 -11.74 16 13 C 0.03 0.42 5.78 -4.97 -0.03 0.39 16 14 N -0.51 -7.03 4.87 -236.65 -1.15 -8.18 16 15 C 0.04 0.51 4.42 -4.14 -0.02 0.49 16 16 C -0.08 -0.97 6.17 -27.51 -0.17 -1.14 16 17 C -0.13 -1.51 6.08 -92.30 -0.56 -2.07 16 18 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 19 C -0.19 -2.25 9.58 -27.47 -0.26 -2.51 16 20 C -0.14 -1.75 6.37 -90.70 -0.58 -2.32 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 22 C 0.07 0.92 5.09 -3.99 -0.02 0.90 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 25 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 26 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 27 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 30 H 0.07 1.19 4.94 -51.93 -0.26 0.94 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.39 7.24 -51.93 -0.38 1.01 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.23 5.64 -51.93 -0.29 0.94 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -30.78 284.94 -8.61 -39.39 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.40 Total: 4.92 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.18 Total: -5.66 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.72 Total: -47.96 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.78 -8.61 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852633691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.028 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds