Wall clock time and date at job start Sun Mar 29 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00301 * 2 1 4 4 H 1.48502 * 109.46848 * 269.99837 * 3 2 1 5 5 H 1.48498 * 109.46928 * 29.99479 * 3 2 1 6 6 H 1.48501 * 109.47544 * 149.99435 * 3 2 1 7 7 C 1.37884 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00141 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99997 * 180.27349 * 10 9 7 12 12 O 1.21276 * 119.99642 * 359.73327 * 11 10 9 13 13 C 1.50697 * 119.99787 * 179.72982 * 11 10 9 14 14 N 1.46910 * 109.46872 * 174.40490 * 13 11 10 15 15 C 1.47167 * 110.99744 * 303.68871 * 14 13 11 16 16 C 1.52092 * 109.49777 * 198.66975 * 15 14 13 17 17 C 1.52381 * 110.31831 * 306.93520 * 16 15 14 18 18 H 1.08999 * 114.97503 * 164.97187 * 17 16 15 19 19 C 1.50895 * 119.18170 * 308.96881 * 17 16 15 20 20 C 1.52402 * 118.99278 * 19.80441 * 17 16 15 21 21 H 1.08997 * 117.39051 * 143.73835 * 20 17 16 22 22 C 1.46747 * 111.00046 * 66.77343 * 14 13 11 23 23 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47140 * 60.00351 * 9 7 2 25 25 H 1.08993 * 109.47524 * 300.00511 * 9 7 2 26 26 H 0.97003 * 120.00532 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.46958 * 294.40001 * 13 11 10 28 28 H 1.08996 * 109.47601 * 54.40154 * 13 11 10 29 29 H 1.09000 * 109.61159 * 319.32836 * 15 14 13 30 30 H 1.09001 * 109.61350 * 79.85379 * 15 14 13 31 31 H 1.08999 * 110.15054 * 186.07801 * 16 15 14 32 32 H 1.09002 * 108.27543 * 66.60659 * 16 15 14 33 33 H 1.08999 * 117.27277 * 1.28007 * 19 17 16 34 34 H 1.08998 * 117.58904 * 216.42075 * 19 17 16 35 35 H 1.09007 * 109.35875 * 300.73215 * 22 14 13 36 36 H 1.08997 * 109.36141 * 60.32584 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5753 0.0022 11 6 5.3249 -2.8216 0.0085 12 8 6.1129 -1.8998 0.0083 13 6 5.8271 -4.2424 0.0158 14 7 7.2905 -4.2452 -0.1134 15 6 7.7142 -3.5259 -1.3253 16 6 9.1377 -3.9262 -1.6816 17 6 10.0564 -3.7384 -0.4805 18 1 11.0244 -4.2331 -0.5597 19 6 10.0531 -2.4175 0.2490 20 6 9.4441 -3.6615 0.9130 21 1 10.0020 -4.1161 1.7317 22 6 7.9243 -3.6607 1.0741 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8912 25 1 3.8752 -0.6805 -0.8887 26 1 3.3694 -3.3127 0.0021 27 1 5.5441 -4.7230 0.9524 28 1 5.3876 -4.7875 -0.8195 29 1 7.0429 -3.7694 -2.1488 30 1 7.6948 -2.4521 -1.1392 31 1 9.5008 -3.3218 -2.5128 32 1 9.1345 -4.9762 -1.9740 33 1 9.3664 -1.6507 -0.1095 34 1 11.0040 -2.0533 0.6380 35 1 7.5750 -2.6361 1.2028 36 1 7.6537 -4.2456 1.9531 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852633691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:37 Heat of formation + Delta-G solvation = -30.901449 kcal Electronic energy + Delta-G solvation = -17223.481067 eV Core-core repulsion = 14514.231300 eV Total energy + Delta-G solvation = -2709.249767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50824 -39.77988 -36.48117 -35.66328 -34.44740 -32.24294 -30.67288 -28.63620 -25.90726 -24.58796 -23.43077 -22.25094 -21.53352 -19.71502 -18.96736 -17.69209 -17.50233 -16.94376 -16.66062 -16.08454 -15.91905 -15.51863 -15.04949 -14.83933 -14.54513 -14.22224 -13.73623 -13.56402 -13.40320 -13.03699 -12.77341 -12.47580 -12.21406 -12.00294 -11.96992 -11.69504 -11.59571 -11.35276 -10.95085 -10.84970 -10.66311 -9.91826 -9.14507 -8.43249 -6.50159 1.28277 1.30941 1.42771 1.67273 2.24046 2.48909 2.70711 2.92029 3.08592 3.77201 3.86594 3.93338 4.10562 4.10956 4.26976 4.34043 4.55451 4.58001 4.71444 4.75060 4.79991 4.91305 4.94732 4.98954 5.02855 5.11088 5.23473 5.27098 5.33292 5.34636 5.54813 5.92930 5.99312 6.07680 6.51350 6.82415 7.12743 7.39311 8.71509 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.005339 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.635243 B = 5243.373388 C = 5530.950530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.705 5.705 11 C 0.466 3.534 12 O -0.589 6.589 13 C 0.039 3.961 14 N -0.499 5.499 15 C 0.035 3.965 16 C -0.081 4.081 17 C -0.124 4.124 18 H 0.119 0.881 19 C -0.192 4.192 20 C -0.149 4.149 21 H 0.123 0.877 22 C 0.064 3.936 23 H 0.273 0.727 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.409 0.591 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.151 -10.068 -0.493 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.355 5.355 11 C 0.253 3.747 12 O -0.471 6.471 13 C -0.092 4.092 14 N -0.221 5.221 15 C -0.093 4.093 16 C -0.119 4.119 17 C -0.143 4.143 18 H 0.137 0.863 19 C -0.229 4.229 20 C -0.167 4.167 21 H 0.141 0.859 22 C -0.064 4.064 23 H 0.082 0.918 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.245 0.755 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.686 -9.806 -0.533 21.110 hybrid contribution -0.892 1.722 0.131 1.944 sum 17.794 -8.084 -0.402 19.549 Atomic orbital electron populations 1.69977 1.07636 1.28612 1.50647 1.25583 0.95513 1.02570 0.93611 0.85871 0.79128 0.79554 0.79371 1.19056 1.19688 1.18861 1.21312 0.90003 0.94598 1.52594 0.92150 1.19023 0.93323 0.81527 0.95210 1.46220 1.07215 1.09488 1.72561 1.22852 0.82157 0.94178 0.75553 1.90585 1.55562 1.48473 1.52445 1.22529 0.89133 0.90354 1.07228 1.62808 1.04161 1.51916 1.03210 1.22172 0.97575 0.97252 0.92268 1.20785 0.92083 1.02662 0.96332 1.21710 1.00603 0.99618 0.92330 0.86308 1.22924 1.02766 0.91670 1.05587 1.22316 0.94218 1.02517 0.97645 0.85863 1.21828 0.92797 0.98693 0.93048 0.91811 0.97423 0.97497 0.75516 0.85418 0.85350 0.91096 0.94562 0.90592 0.89967 0.91428 0.87518 0.94500 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.94 44.43 27.47 68.60 1.88 46.32 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 7 C -0.55 -30.22 9.83 25.60 0.25 -29.97 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.45 4.50 85.63 0.38 11.84 16 10 N -0.70 -27.48 5.55 -466.81 -2.59 -30.07 16 11 C 0.47 16.59 7.20 87.66 0.63 17.22 16 12 O -0.59 -25.29 11.74 -3.02 -0.04 -25.33 16 13 C 0.04 0.97 5.78 85.55 0.49 1.46 16 14 N -0.50 -12.85 4.87 -902.63 -4.40 -17.24 16 15 C 0.04 0.96 4.42 85.95 0.38 1.33 16 16 C -0.08 -1.72 6.17 30.09 0.19 -1.53 16 17 C -0.12 -2.54 6.08 -11.88 -0.07 -2.61 16 18 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 19 C -0.19 -4.47 9.58 30.11 0.29 -4.18 16 20 C -0.15 -3.33 6.37 -10.84 -0.07 -3.40 16 21 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 22 C 0.06 1.71 5.09 86.28 0.44 2.15 16 23 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 24 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 25 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 26 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 27 H 0.13 2.57 8.11 -2.39 -0.02 2.55 16 28 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 1.85 7.95 -2.39 -0.02 1.83 16 30 H 0.04 1.25 4.94 -2.39 -0.01 1.24 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.99 7.24 -2.39 -0.02 1.97 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.27 5.64 -2.38 -0.01 1.25 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.93 284.94 -1.21 -68.14 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.25 Total: 19.12 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 3.38 Total: -5.66 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -6.69 Total: -102.59 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -66.93 -1.21 -68.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852633691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.239 kcal (2) G-P(sol) polarization free energy of solvation -66.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds