Wall clock time and date at job start Sun Mar 29 2020 22:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00435 * 2 1 4 4 H 1.48496 * 109.47558 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47033 * 300.00325 * 3 2 1 6 6 H 1.48500 * 109.46808 * 59.99821 * 3 2 1 7 7 C 1.37884 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99552 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.53117 * 109.52302 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27764 * 177.62513 * 10 9 7 12 12 N 1.46850 * 109.52140 * 300.82280 * 11 10 9 13 13 C 1.46901 * 110.99898 * 185.84031 * 12 11 10 14 14 N 1.46496 * 109.47263 * 154.99995 * 13 12 11 15 15 C 1.46356 * 134.66379 * 90.00190 * 14 13 12 16 16 C 1.52889 * 90.57094 * 179.97438 * 15 14 13 17 17 C 1.34596 * 134.66908 * 269.99750 * 14 13 12 18 18 O 1.21291 * 131.84643 * 0.04143 * 17 14 13 19 19 C 1.46847 * 111.19969 * 61.74462 * 12 11 10 20 20 C 1.53042 * 109.51983 * 298.25731 * 19 12 11 21 21 H 0.96995 * 119.99825 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.51705 * 59.87624 * 9 7 2 23 23 H 1.09008 * 109.50124 * 57.68490 * 10 9 7 24 24 H 1.09002 * 109.53808 * 297.59133 * 10 9 7 25 25 H 1.09001 * 109.46210 * 180.80805 * 11 10 9 26 26 H 1.09001 * 109.45635 * 60.83058 * 11 10 9 27 27 H 1.08998 * 109.47520 * 34.99760 * 13 12 11 28 28 H 1.09007 * 109.47019 * 275.00281 * 13 12 11 29 29 H 1.09007 * 113.05199 * 295.44747 * 15 14 13 30 30 H 1.09002 * 113.05809 * 64.54751 * 15 14 13 31 31 H 1.09002 * 114.37353 * 113.39690 * 16 15 14 32 32 H 1.08999 * 114.37437 * 246.59896 * 16 15 14 33 33 H 1.09001 * 109.46420 * 58.26808 * 19 12 11 34 34 H 1.08997 * 109.46310 * 178.24410 * 19 12 11 35 35 H 1.09000 * 109.50309 * 299.23260 * 20 19 12 36 36 H 1.09004 * 109.49995 * 179.12430 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0018 11 6 1.4750 -4.9852 0.0580 12 7 0.6540 -5.0201 1.2751 13 6 0.0077 -6.3293 1.4368 14 7 -0.2851 -6.5577 2.8540 15 6 -1.4237 -6.2725 3.7282 16 6 -0.6900 -6.8996 4.9139 17 6 0.3836 -7.1150 3.8805 18 8 1.4837 -7.6212 3.9501 19 6 -0.3397 -3.9389 1.2765 20 6 0.3760 -2.5864 1.2530 21 1 -0.4849 0.8400 -0.0004 22 1 0.6219 -2.5566 -0.8890 23 1 2.8996 -3.5846 0.8661 24 1 2.8427 -3.6320 -0.9127 25 1 2.1802 -5.8162 0.0717 26 1 0.8307 -5.0700 -0.8171 27 1 0.6744 -7.1111 1.0731 28 1 -0.9208 -6.3492 0.8661 29 1 -1.6074 -5.2056 3.8554 30 1 -2.3247 -6.8180 3.4474 31 1 -0.4218 -6.1947 5.7008 32 1 -1.1438 -7.8167 5.2897 33 1 -0.9754 -4.0288 0.3956 34 1 -0.9524 -4.0100 2.1752 35 1 1.0012 -2.4901 2.1406 36 1 -0.3620 -1.7844 1.2383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857234777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:33 Heat of formation + Delta-G solvation = -21.993206 kcal Electronic energy + Delta-G solvation = -17322.641073 eV Core-core repulsion = 14613.777596 eV Total energy + Delta-G solvation = -2708.863477 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67062 -39.68203 -37.46800 -35.75768 -33.45104 -31.53352 -30.71035 -27.71700 -25.48915 -25.11690 -23.77086 -23.07812 -20.41722 -19.46990 -18.46993 -17.68176 -17.63944 -17.57331 -16.69229 -16.15545 -15.69099 -14.99367 -14.86899 -14.32031 -14.16824 -14.09997 -13.95431 -13.18197 -12.94353 -12.89498 -12.77917 -12.54387 -12.50526 -12.31245 -12.02326 -11.91912 -11.40136 -11.01951 -10.85922 -10.70049 -10.42079 -9.90074 -9.24491 -8.10028 -6.22602 1.38555 1.40880 1.51126 1.52054 2.06917 2.42734 2.99116 3.13862 3.17668 3.78240 4.01361 4.11803 4.21091 4.26500 4.36065 4.39957 4.53457 4.64354 4.69431 4.85413 4.88292 4.92613 5.04639 5.14569 5.19217 5.26986 5.52076 5.59534 5.64300 5.71391 5.97663 6.02449 6.21833 6.27897 6.39651 6.87878 7.23591 7.44982 8.94848 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.005590 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.538414 B = 5007.452276 C = 5199.496726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.100 4.100 11 C 0.073 3.927 12 N -0.569 5.569 13 C 0.299 3.701 14 N -0.630 5.630 15 C 0.095 3.905 16 C -0.146 4.146 17 C 0.498 3.502 18 O -0.582 6.582 19 C 0.076 3.924 20 C -0.094 4.094 21 H 0.261 0.739 22 H -0.005 1.005 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -12.475 6.182 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.055 4.055 12 N -0.297 5.297 13 C 0.089 3.911 14 N -0.366 5.366 15 C -0.027 4.027 16 C -0.186 4.186 17 C 0.286 3.714 18 O -0.461 6.461 19 C -0.052 4.052 20 C -0.132 4.132 21 H 0.070 0.930 22 H 0.013 0.987 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.285 -12.516 6.354 15.379 hybrid contribution 0.176 1.218 -0.971 1.568 sum -6.108 -11.298 5.382 13.925 Atomic orbital electron populations 1.69992 1.06972 1.27039 1.51532 1.25690 0.95718 1.02158 0.94798 0.85607 0.78985 0.79967 0.77702 1.19608 1.20426 1.20521 1.21597 0.92864 0.92411 1.50380 0.93553 1.18664 0.93142 0.92335 0.93317 1.21551 0.98072 0.94260 0.99936 1.21957 0.95803 0.98253 0.89476 1.61648 1.24816 1.03884 1.39329 1.21709 0.98614 0.90475 0.80288 1.50513 1.19491 1.57854 1.08738 1.22840 0.90995 1.02615 0.86221 1.23516 0.92921 1.05121 0.97018 1.23257 0.86316 0.75776 0.86025 1.90647 1.23590 1.47830 1.84001 1.22038 0.92573 0.91111 0.99433 1.21401 0.99103 0.94980 0.97712 0.92985 0.98660 0.94041 0.92557 0.90207 0.94389 0.89380 0.90170 0.89680 0.86728 0.85018 0.83308 0.95597 0.90893 0.96010 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 11.38 21.45 0.24 -52.34 16 2 C 0.01 0.83 5.31 84.66 0.45 1.28 16 3 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.53 -30.18 8.56 25.60 0.22 -29.97 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.21 16 10 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 11 C 0.07 2.55 5.40 86.32 0.47 3.02 16 12 N -0.57 -19.74 4.75 -908.70 -4.32 -24.06 16 13 C 0.30 8.09 6.69 170.81 1.14 9.23 16 14 N -0.63 -15.79 3.57 -918.18 -3.28 -19.08 16 15 C 0.09 1.45 8.55 78.41 0.67 2.12 16 16 C -0.15 -2.11 8.56 29.77 0.25 -1.85 16 17 C 0.50 13.92 9.25 79.69 0.74 14.66 16 18 O -0.58 -22.43 18.03 -3.06 -0.06 -22.48 16 19 C 0.08 2.81 5.31 86.33 0.46 3.27 16 20 C -0.09 -4.46 5.12 30.65 0.16 -4.31 16 21 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 22 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 23 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.08 2.49 7.91 -2.39 -0.02 2.47 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 2.36 7.71 -2.39 -0.02 2.34 16 28 H 0.08 1.81 7.92 -2.38 -0.02 1.79 16 29 H 0.08 1.35 7.34 -2.38 -0.02 1.33 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 2.39 6.94 -2.39 -0.02 2.37 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 3.45 6.18 -2.39 -0.01 3.44 16 Total: -1.00 -71.47 292.15 0.36 -71.12 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.05 Total: 5.16 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.69 Total: -4.49 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -7.36 Total: -95.47 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.47 0.36 -71.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857234777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.124 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds