Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50608 * 59.92371 * 9 7 2 11 11 C 1.53121 * 109.50414 * 299.80360 * 9 7 2 12 12 C 1.53120 * 109.16081 * 182.40361 * 11 9 7 13 13 C 1.53045 * 109.27727 * 57.65743 * 12 11 9 14 14 N 1.46843 * 109.52087 * 300.81903 * 13 12 11 15 15 C 1.46899 * 111.00024 * 185.83789 * 14 13 12 16 16 N 1.46507 * 109.46925 * 30.79381 * 15 14 13 17 17 C 1.45720 * 133.17157 * 269.64540 * 16 15 14 18 18 C 1.52360 * 87.95774 * 180.02562 * 17 16 15 19 19 C 1.33833 * 133.17670 * 89.99594 * 16 15 14 20 20 O 1.21277 * 133.24665 * 359.96547 * 19 16 15 21 21 C 1.46847 * 111.19941 * 61.74146 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.52436 * 302.30830 * 11 9 7 24 24 H 1.08995 * 109.52492 * 62.49992 * 11 9 7 25 25 H 1.08996 * 109.50728 * 297.71334 * 12 11 9 26 26 H 1.09003 * 109.50649 * 177.59287 * 12 11 9 27 27 H 1.08999 * 109.45810 * 180.80448 * 13 12 11 28 28 H 1.08993 * 109.45996 * 60.83367 * 13 12 11 29 29 H 1.08999 * 109.46911 * 150.78989 * 15 14 13 30 30 H 1.08992 * 109.47719 * 270.79041 * 15 14 13 31 31 H 1.08999 * 113.46996 * 294.80628 * 17 16 15 32 32 H 1.08998 * 113.47439 * 65.26397 * 17 16 15 33 33 H 1.09004 * 114.16005 * 246.19252 * 18 17 16 34 34 H 1.08996 * 113.91252 * 114.17380 * 18 17 16 35 35 H 1.09003 * 109.46450 * 178.24006 * 21 14 13 36 36 H 1.08996 * 109.46260 * 58.27342 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9369 1.2748 13 6 0.6990 -5.0591 1.2372 14 7 1.5112 -4.9349 0.0202 15 6 2.4282 -6.0739 -0.1193 16 7 1.8215 -7.2654 0.4796 17 6 1.8584 -7.8364 1.8198 18 6 0.9569 -8.9537 1.3095 19 6 1.0342 -8.2336 -0.0040 20 8 0.5589 -8.4489 -1.0988 21 6 2.2448 -3.6630 -0.0011 22 1 -0.4850 0.8401 0.0004 23 1 0.9988 -2.4866 2.1406 24 1 -0.3633 -1.7815 1.2352 25 1 -0.9948 -4.0175 0.4064 26 1 -0.9334 -4.0203 2.1859 27 1 0.1922 -6.0241 1.2387 28 1 1.3436 -4.9862 2.1130 29 1 2.6219 -6.2571 -1.1762 30 1 3.3662 -5.8496 0.3884 31 1 2.8489 -8.1797 2.1183 32 1 1.3850 -7.2068 2.5731 33 1 -0.0389 -8.9611 1.7526 34 1 1.4301 -9.9356 1.3044 35 1 2.8609 -3.6140 -0.8990 36 1 2.8823 -3.5966 0.8805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857236210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = 6.457259 kcal Electronic energy + Delta-G solvation = -17478.246258 eV Core-core repulsion = 14770.616486 eV Total energy + Delta-G solvation = -2707.629772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07070 -38.05362 -36.43030 -33.80063 -31.97716 -30.03283 -29.20870 -25.15170 -25.01257 -24.50379 -22.00653 -21.34735 -18.67074 -18.44965 -17.05003 -16.75001 -16.52274 -16.20169 -14.79911 -14.53311 -13.86956 -13.81637 -13.32361 -13.17685 -12.79946 -12.53293 -12.30079 -12.02095 -11.85427 -11.80352 -11.51376 -10.94283 -10.75000 -10.67202 -10.15823 -9.96364 -9.81415 -9.49487 -9.20733 -8.92059 -8.73819 -8.30899 -7.67961 -5.98238 -4.04966 2.53304 2.97635 3.31540 3.36619 3.38603 3.91290 4.37776 4.46700 4.55342 4.76975 5.17778 5.19681 5.31728 5.40992 5.54268 5.65524 5.75489 5.77181 5.98656 6.17856 6.31064 6.43827 6.49166 6.64195 6.71545 6.73591 6.92970 7.19482 7.34244 7.60600 7.69674 7.75576 8.05826 8.15084 8.25396 8.45609 8.98742 9.59367 11.07836 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051400 B = 0.005499 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.614244 B = 5090.715931 C = 5216.074043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.553 5.553 15 C 0.294 3.706 16 N -0.626 5.626 17 C 0.096 3.904 18 C -0.180 4.180 19 C 0.526 3.474 20 O -0.512 6.512 21 C 0.070 3.930 22 H 0.261 0.739 23 H 0.029 0.971 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -14.251 6.375 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.157 4.157 13 C -0.060 4.060 14 N -0.281 5.281 15 C 0.084 3.916 16 N -0.363 5.363 17 C -0.027 4.027 18 C -0.220 4.220 19 C 0.312 3.688 20 O -0.385 6.385 21 C -0.057 4.057 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.800 -14.073 5.271 15.286 hybrid contribution 1.133 1.091 0.784 1.757 sum 3.933 -12.982 6.055 14.855 Atomic orbital electron populations 1.69886 1.05868 1.26491 1.50395 1.24936 0.94825 0.98966 0.95061 0.86674 0.79602 0.83249 0.78538 1.21293 1.20394 1.20282 1.21086 0.92757 0.90611 1.51084 0.92869 1.18655 0.92597 0.90112 0.94973 0.94673 1.21651 1.00017 0.94711 0.98394 1.21700 0.97260 0.96500 1.00198 1.21997 0.95528 0.98863 0.89584 1.62400 1.24499 1.02460 1.38748 1.22102 0.91403 0.79829 0.98238 1.50193 1.50235 1.24249 1.11615 1.22532 1.00554 0.93056 0.86553 1.23399 1.02886 1.00323 0.95392 1.21437 0.77194 0.81306 0.88912 1.90732 1.50104 1.72449 1.25189 1.22332 0.96506 0.87975 0.98867 0.92954 0.95181 0.89072 0.92120 0.93556 0.92299 0.96185 0.89068 0.93137 0.89604 0.89417 0.86590 0.86788 0.92022 0.96057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 11.37 55.43 0.63 -24.76 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C 0.07 1.20 4.18 -3.83 -0.02 1.18 16 14 N -0.55 -10.42 4.91 -238.58 -1.17 -11.60 16 15 C 0.29 4.51 7.19 -63.31 -0.46 4.05 16 16 N -0.63 -8.31 2.05 -194.24 -0.40 -8.71 16 17 C 0.10 0.84 8.09 -9.94 -0.08 0.76 16 18 C -0.18 -1.50 8.33 -28.57 -0.24 -1.73 16 19 C 0.53 7.50 9.06 -16.90 -0.15 7.35 16 20 O -0.51 -9.68 18.03 5.56 0.10 -9.58 16 21 C 0.07 1.47 4.52 -3.83 -0.02 1.45 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.95 5.83 -51.93 -0.30 0.65 16 28 H 0.02 0.34 7.89 -51.93 -0.41 -0.07 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.74 6.96 -51.93 -0.36 0.38 16 33 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.27 8.12 -51.93 -0.42 0.84 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -31.63 287.98 -8.94 -40.57 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.57 Total: -2.69 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.85 Total: -3.71 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.94 Total: -45.07 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.10 Total: -9.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.63 -8.94 -40.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857236210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.030 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds