Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50608 * 59.92371 * 9 7 2 11 11 C 1.53121 * 109.50414 * 299.80360 * 9 7 2 12 12 C 1.53120 * 109.16081 * 182.40361 * 11 9 7 13 13 C 1.53045 * 109.27727 * 57.65743 * 12 11 9 14 14 N 1.46843 * 109.52087 * 300.81903 * 13 12 11 15 15 C 1.46899 * 111.00024 * 185.83789 * 14 13 12 16 16 N 1.46507 * 109.46925 * 30.79381 * 15 14 13 17 17 C 1.45720 * 133.17157 * 269.64540 * 16 15 14 18 18 C 1.52360 * 87.95774 * 180.02562 * 17 16 15 19 19 C 1.33833 * 133.17670 * 89.99594 * 16 15 14 20 20 O 1.21277 * 133.24665 * 359.96547 * 19 16 15 21 21 C 1.46847 * 111.19941 * 61.74146 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.52436 * 302.30830 * 11 9 7 24 24 H 1.08995 * 109.52492 * 62.49992 * 11 9 7 25 25 H 1.08996 * 109.50728 * 297.71334 * 12 11 9 26 26 H 1.09003 * 109.50649 * 177.59287 * 12 11 9 27 27 H 1.08999 * 109.45810 * 180.80448 * 13 12 11 28 28 H 1.08993 * 109.45996 * 60.83367 * 13 12 11 29 29 H 1.08999 * 109.46911 * 150.78989 * 15 14 13 30 30 H 1.08992 * 109.47719 * 270.79041 * 15 14 13 31 31 H 1.08999 * 113.46996 * 294.80628 * 17 16 15 32 32 H 1.08998 * 113.47439 * 65.26397 * 17 16 15 33 33 H 1.09004 * 114.16005 * 246.19252 * 18 17 16 34 34 H 1.08996 * 113.91252 * 114.17380 * 18 17 16 35 35 H 1.09003 * 109.46450 * 178.24006 * 21 14 13 36 36 H 1.08996 * 109.46260 * 58.27342 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9369 1.2748 13 6 0.6990 -5.0591 1.2372 14 7 1.5112 -4.9349 0.0202 15 6 2.4282 -6.0739 -0.1193 16 7 1.8215 -7.2654 0.4796 17 6 1.8584 -7.8364 1.8198 18 6 0.9569 -8.9537 1.3095 19 6 1.0342 -8.2336 -0.0040 20 8 0.5589 -8.4489 -1.0988 21 6 2.2448 -3.6630 -0.0011 22 1 -0.4850 0.8401 0.0004 23 1 0.9988 -2.4866 2.1406 24 1 -0.3633 -1.7815 1.2352 25 1 -0.9948 -4.0175 0.4064 26 1 -0.9334 -4.0203 2.1859 27 1 0.1922 -6.0241 1.2387 28 1 1.3436 -4.9862 2.1130 29 1 2.6219 -6.2571 -1.1762 30 1 3.3662 -5.8496 0.3884 31 1 2.8489 -8.1797 2.1183 32 1 1.3850 -7.2068 2.5731 33 1 -0.0389 -8.9611 1.7526 34 1 1.4301 -9.9356 1.3044 35 1 2.8609 -3.6140 -0.8990 36 1 2.8823 -3.5966 0.8805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857236210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = -14.495599 kcal Electronic energy + Delta-G solvation = -17479.154842 eV Core-core repulsion = 14770.616486 eV Total energy + Delta-G solvation = -2708.538356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05443 -39.61467 -37.62233 -35.57258 -33.69384 -31.76007 -30.45896 -26.97482 -26.27617 -25.46959 -23.60962 -22.97186 -20.41767 -19.49653 -18.51037 -17.86769 -17.71010 -17.59548 -16.58771 -16.03868 -15.39396 -15.24654 -14.98091 -14.40055 -14.18915 -14.12710 -13.84324 -13.37561 -12.94827 -12.84144 -12.80511 -12.72993 -12.56222 -12.38733 -11.87427 -11.75251 -11.42656 -11.05562 -10.88698 -10.70214 -10.39205 -10.08709 -9.09712 -8.08493 -6.23406 1.42066 1.43768 1.47907 1.51397 2.01461 2.43059 3.04679 3.14775 3.18830 3.73661 4.03062 4.15313 4.21415 4.24988 4.35716 4.43860 4.56327 4.58539 4.71344 4.82577 4.86066 4.91968 5.04634 5.10682 5.14588 5.31536 5.44118 5.52599 5.62033 5.71526 5.94476 6.11210 6.19171 6.23828 6.42717 6.89324 7.19517 7.44959 8.96340 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051400 B = 0.005499 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.614244 B = 5090.715931 C = 5216.074043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.051 3.949 10 H -0.012 1.012 11 C -0.101 4.101 12 C -0.114 4.114 13 C 0.077 3.923 14 N -0.576 5.576 15 C 0.294 3.706 16 N -0.633 5.633 17 C 0.097 3.903 18 C -0.151 4.151 19 C 0.503 3.497 20 O -0.574 6.574 21 C 0.087 3.913 22 H 0.260 0.740 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.058 0.942 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -15.649 8.547 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.006 0.994 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.051 4.051 14 N -0.304 5.304 15 C 0.084 3.916 16 N -0.369 5.369 17 C -0.023 4.023 18 C -0.191 4.191 19 C 0.292 3.708 20 O -0.452 6.452 21 C -0.041 4.041 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.154 0.846 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.146 -15.491 7.489 17.699 hybrid contribution 0.704 1.505 0.087 1.664 sum 4.851 -13.986 7.576 16.630 Atomic orbital electron populations 1.70049 1.07357 1.27174 1.51145 1.25759 0.95623 1.02495 0.94709 0.85635 0.78349 0.78903 0.78893 1.21130 1.19305 1.19754 1.21481 0.93105 0.91910 1.50956 0.92597 1.18591 0.93046 0.91522 0.93626 0.99358 1.21438 0.99088 0.95908 0.97514 1.21625 0.97671 0.95359 1.00493 1.21935 0.94964 0.98424 0.89730 1.62251 1.25615 1.02660 1.39906 1.21951 0.91675 0.79643 0.98353 1.50505 1.49564 1.23101 1.13684 1.22863 1.02525 0.92628 0.84323 1.23429 1.04236 1.01163 0.90240 1.22697 0.76240 0.82044 0.89845 1.90691 1.52344 1.74045 1.28101 1.21954 0.95271 0.87778 0.99085 0.93087 0.95105 0.92575 0.94436 0.90867 0.90406 0.94346 0.90434 0.90852 0.86562 0.88421 0.84633 0.83706 0.92319 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.10 11.37 21.45 0.24 -53.86 16 2 C 0.01 0.72 5.30 84.66 0.45 1.17 16 3 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.71 8.56 25.60 0.22 -29.49 16 8 H 0.06 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 10 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C -0.10 -4.87 5.03 30.67 0.15 -4.71 16 12 C -0.11 -4.46 6.09 30.65 0.19 -4.28 16 13 C 0.08 2.55 4.18 86.33 0.36 2.91 16 14 N -0.58 -21.28 4.91 -908.73 -4.46 -25.74 16 15 C 0.29 8.56 7.19 170.80 1.23 9.79 16 16 N -0.63 -15.16 2.05 -887.36 -1.82 -16.98 16 17 C 0.10 1.24 8.09 82.98 0.67 1.91 16 18 C -0.15 -1.86 8.33 29.42 0.24 -1.61 16 19 C 0.50 13.47 9.06 84.24 0.76 14.23 16 20 O -0.57 -21.90 18.03 -3.02 -0.05 -21.95 16 21 C 0.09 3.62 4.52 86.33 0.39 4.01 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 23 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 3.08 6.17 -2.39 -0.01 3.07 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.08 2.30 5.83 -2.39 -0.01 2.28 16 28 H 0.04 1.15 7.89 -2.39 -0.02 1.13 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 1.82 7.86 -2.39 -0.02 1.80 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.13 6.96 -2.39 -0.02 1.11 16 33 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.58 287.98 1.62 -70.96 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.05 Total: 5.34 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.64 Total: -3.47 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -6.04 Total: -96.58 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.58 1.62 -70.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857236210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.460 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds