Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47188 * 240.00124 * 3 2 1 5 5 H 1.48498 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46795 * 120.00145 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99690 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.53324 * 300.09427 * 9 7 2 11 11 C 1.53123 * 109.50285 * 60.19881 * 9 7 2 12 12 C 1.53122 * 109.15685 * 177.59355 * 11 9 7 13 13 C 1.53036 * 109.27660 * 302.34253 * 12 11 9 14 14 N 1.46843 * 109.52539 * 59.18308 * 13 12 11 15 15 C 1.46901 * 110.99853 * 174.16076 * 14 13 12 16 16 N 1.46497 * 109.47066 * 279.20763 * 15 14 13 17 17 C 1.47386 * 132.38000 * 89.99883 * 16 15 14 18 18 C 1.53737 * 86.50558 * 179.97438 * 17 16 15 19 19 C 1.35841 * 132.38058 * 269.97886 * 16 15 14 20 20 O 1.21279 * 134.17594 * 0.02817 * 19 16 15 21 21 C 1.46848 * 111.19652 * 298.25436 * 14 13 12 22 22 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.51931 * 297.49707 * 11 9 7 24 24 H 1.08996 * 109.52310 * 57.62470 * 11 9 7 25 25 H 1.09001 * 109.50539 * 62.28463 * 12 11 9 26 26 H 1.09002 * 109.49753 * 182.36060 * 12 11 9 27 27 H 1.08997 * 109.46100 * 299.15930 * 13 12 11 28 28 H 1.09003 * 109.45701 * 179.19875 * 13 12 11 29 29 H 1.09005 * 109.47121 * 159.20899 * 15 14 13 30 30 H 1.09002 * 109.47274 * 39.20603 * 15 14 13 31 31 H 1.08998 * 113.70541 * 65.58116 * 17 16 15 32 32 H 1.09001 * 113.80234 * 294.39091 * 17 16 15 33 33 H 1.09002 * 113.68508 * 114.42442 * 18 17 16 34 34 H 1.08991 * 113.69407 * 245.57731 * 18 17 16 35 35 H 1.08999 * 109.45920 * 181.75617 * 21 14 13 36 36 H 1.08993 * 109.46198 * 301.73033 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6223 -2.5578 0.8868 11 6 0.3746 -2.5823 -1.2546 12 6 -0.3410 -3.9358 -1.2783 13 6 0.6990 -5.0578 -1.2417 14 7 1.5112 -4.9347 -0.0245 15 6 2.4283 -6.0740 0.1138 16 7 1.7049 -7.2179 0.6744 17 6 0.9565 -8.3232 0.0495 18 6 0.6898 -8.8253 1.4778 19 6 1.4906 -7.6293 1.9512 20 8 1.8132 -7.2059 3.0409 21 6 2.2449 -3.6629 -0.0022 22 1 -0.4850 0.8401 0.0004 23 1 -0.3633 -1.7803 -1.2367 24 1 0.9986 -2.4835 -2.1428 25 1 -0.9947 -4.0171 -0.4099 26 1 -0.9340 -4.0179 -2.1892 27 1 1.3437 -4.9842 -2.1176 28 1 0.1922 -6.0229 -1.2441 29 1 3.2484 -5.8016 0.7783 30 1 2.8269 -6.3405 -0.8650 31 1 1.5790 -8.9946 -0.5419 32 1 0.0577 -8.0032 -0.4776 33 1 -0.3610 -8.7901 1.7653 34 1 1.1600 -9.7831 1.7004 35 1 2.8609 -3.6147 0.8958 36 1 2.8823 -3.5957 -0.8838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857236211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = -3.598598 kcal Electronic energy + Delta-G solvation = -17344.621204 eV Core-core repulsion = 14636.555377 eV Total energy + Delta-G solvation = -2708.065827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32330 -38.06953 -36.31140 -33.76246 -31.92758 -29.95933 -29.14438 -25.05942 -24.86057 -24.38664 -21.99015 -21.35414 -18.70852 -18.37517 -16.74131 -16.58044 -16.42622 -16.08346 -14.91059 -14.46940 -14.09852 -13.64578 -13.28254 -13.07160 -12.60398 -12.54627 -12.38339 -12.03661 -11.86122 -11.72334 -11.26109 -10.92746 -10.71469 -10.68911 -10.14798 -9.87001 -9.83083 -9.48729 -9.26840 -8.74292 -8.68431 -8.30253 -7.74127 -5.96610 -4.03063 2.61309 3.06069 3.33334 3.37996 3.40493 4.01884 4.38946 4.50037 4.61345 4.86622 5.14000 5.23946 5.33444 5.46458 5.49611 5.62938 5.74642 5.83351 5.99037 6.17928 6.31931 6.45488 6.60871 6.66730 6.71848 6.75439 6.93545 7.19745 7.35538 7.60764 7.71589 7.77203 8.07908 8.16593 8.37109 8.47497 9.00562 9.61210 11.09501 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039620 B = 0.005745 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.551535 B = 4872.881405 C = 5182.427030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.067 3.933 14 N -0.554 5.554 15 C 0.287 3.713 16 N -0.625 5.625 17 C 0.104 3.896 18 C -0.178 4.178 19 C 0.531 3.469 20 O -0.506 6.506 21 C 0.073 3.927 22 H 0.260 0.740 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.024 0.976 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -16.205 -3.646 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.061 4.061 14 N -0.281 5.281 15 C 0.077 3.923 16 N -0.364 5.364 17 C -0.019 4.019 18 C -0.218 4.218 19 C 0.317 3.683 20 O -0.379 6.379 21 C -0.054 4.054 22 H 0.070 0.930 23 H 0.109 0.891 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.390 -15.674 -2.725 15.914 hybrid contribution 0.960 1.021 -0.887 1.659 sum 1.350 -14.653 -3.612 15.152 Atomic orbital electron populations 1.69882 1.05869 1.26468 1.50516 1.24929 0.94827 0.98963 0.95062 0.86673 0.79607 0.83227 0.78558 1.20379 1.21302 1.20274 1.21093 0.92790 0.90626 1.50957 0.92855 1.18665 0.92611 0.90179 0.94903 0.94744 1.21654 1.00055 0.94677 0.98453 1.21674 0.97171 0.96512 1.00149 1.22042 0.95670 0.98651 0.89731 1.61746 1.25243 1.02731 1.38388 1.21783 0.90333 0.82742 0.97477 1.51202 1.53565 1.24636 1.07002 1.22921 0.96100 0.86935 0.95903 1.23871 1.03081 0.99523 0.95357 1.22135 0.78350 0.84458 0.83354 1.90736 1.55759 1.67004 1.24377 1.22286 0.96478 0.87749 0.98903 0.92982 0.89071 0.95098 0.92179 0.93511 0.95810 0.92741 0.89449 0.93052 0.89683 0.89575 0.87001 0.87295 0.92061 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 11.36 55.43 0.63 -24.99 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.61 5.03 -26.60 -0.13 -2.74 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.07 1.14 5.31 -3.84 -0.02 1.12 16 14 N -0.55 -10.38 4.75 -238.58 -1.13 -11.51 16 15 C 0.29 4.41 6.57 -63.32 -0.42 4.00 16 16 N -0.63 -8.55 3.47 -182.07 -0.63 -9.18 16 17 C 0.10 0.91 8.82 -3.34 -0.03 0.88 16 18 C -0.18 -1.57 8.29 -27.14 -0.22 -1.80 16 19 C 0.53 7.98 9.65 -10.26 -0.10 7.88 16 20 O -0.51 -10.01 18.03 5.56 0.10 -9.91 16 21 C 0.07 1.56 4.62 -3.83 -0.02 1.54 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.80 6.75 -51.93 -0.35 0.45 16 29 H 0.09 1.40 7.71 -51.93 -0.40 1.00 16 30 H 0.05 0.68 7.92 -51.93 -0.41 0.27 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.71 7.25 -51.93 -0.38 0.33 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.33 7.91 -51.93 -0.41 0.92 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -32.06 292.01 -8.97 -41.03 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.62 Total: -3.00 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.70 Total: -3.25 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.14 Total: -45.68 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.10 Total: -9.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.06 -8.97 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857236211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.429 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds