Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47188 * 240.00124 * 3 2 1 5 5 H 1.48498 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46795 * 120.00145 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99690 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.53324 * 300.09427 * 9 7 2 11 11 C 1.53123 * 109.50285 * 60.19881 * 9 7 2 12 12 C 1.53122 * 109.15685 * 177.59355 * 11 9 7 13 13 C 1.53036 * 109.27660 * 302.34253 * 12 11 9 14 14 N 1.46843 * 109.52539 * 59.18308 * 13 12 11 15 15 C 1.46901 * 110.99853 * 174.16076 * 14 13 12 16 16 N 1.46497 * 109.47066 * 279.20763 * 15 14 13 17 17 C 1.47386 * 132.38000 * 89.99883 * 16 15 14 18 18 C 1.53737 * 86.50558 * 179.97438 * 17 16 15 19 19 C 1.35841 * 132.38058 * 269.97886 * 16 15 14 20 20 O 1.21279 * 134.17594 * 0.02817 * 19 16 15 21 21 C 1.46848 * 111.19652 * 298.25436 * 14 13 12 22 22 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.51931 * 297.49707 * 11 9 7 24 24 H 1.08996 * 109.52310 * 57.62470 * 11 9 7 25 25 H 1.09001 * 109.50539 * 62.28463 * 12 11 9 26 26 H 1.09002 * 109.49753 * 182.36060 * 12 11 9 27 27 H 1.08997 * 109.46100 * 299.15930 * 13 12 11 28 28 H 1.09003 * 109.45701 * 179.19875 * 13 12 11 29 29 H 1.09005 * 109.47121 * 159.20899 * 15 14 13 30 30 H 1.09002 * 109.47274 * 39.20603 * 15 14 13 31 31 H 1.08998 * 113.70541 * 65.58116 * 17 16 15 32 32 H 1.09001 * 113.80234 * 294.39091 * 17 16 15 33 33 H 1.09002 * 113.68508 * 114.42442 * 18 17 16 34 34 H 1.08991 * 113.69407 * 245.57731 * 18 17 16 35 35 H 1.08999 * 109.45920 * 181.75617 * 21 14 13 36 36 H 1.08993 * 109.46198 * 301.73033 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6223 -2.5578 0.8868 11 6 0.3746 -2.5823 -1.2546 12 6 -0.3410 -3.9358 -1.2783 13 6 0.6990 -5.0578 -1.2417 14 7 1.5112 -4.9347 -0.0245 15 6 2.4283 -6.0740 0.1138 16 7 1.7049 -7.2179 0.6744 17 6 0.9565 -8.3232 0.0495 18 6 0.6898 -8.8253 1.4778 19 6 1.4906 -7.6293 1.9512 20 8 1.8132 -7.2059 3.0409 21 6 2.2449 -3.6629 -0.0022 22 1 -0.4850 0.8401 0.0004 23 1 -0.3633 -1.7803 -1.2367 24 1 0.9986 -2.4835 -2.1428 25 1 -0.9947 -4.0171 -0.4099 26 1 -0.9340 -4.0179 -2.1892 27 1 1.3437 -4.9842 -2.1176 28 1 0.1922 -6.0229 -1.2441 29 1 3.2484 -5.8016 0.7783 30 1 2.8269 -6.3405 -0.8650 31 1 1.5790 -8.9946 -0.5419 32 1 0.0577 -8.0032 -0.4776 33 1 -0.3610 -8.7901 1.7653 34 1 1.1600 -9.7831 1.7004 35 1 2.8609 -3.6147 0.8958 36 1 2.8823 -3.5957 -0.8838 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857236211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = -26.030777 kcal Electronic energy + Delta-G solvation = -17345.593936 eV Core-core repulsion = 14636.555377 eV Total energy + Delta-G solvation = -2709.038559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35278 -39.64151 -37.52823 -35.57844 -33.63931 -31.74598 -30.35782 -26.98312 -26.06782 -25.36827 -23.56614 -23.01439 -20.42130 -19.48430 -18.50200 -17.60592 -17.56111 -17.45595 -16.60529 -16.13405 -15.60662 -15.07069 -14.89801 -14.43169 -14.16877 -14.05773 -13.90865 -13.43210 -12.87179 -12.80810 -12.74347 -12.63053 -12.47944 -12.37449 -11.86781 -11.75013 -11.45274 -11.08599 -10.89704 -10.71242 -10.40583 -9.87632 -9.17287 -8.10266 -6.25257 1.39790 1.41858 1.48876 1.50487 2.08082 2.41556 3.09606 3.16597 3.20798 3.75027 4.01617 4.10831 4.24751 4.29585 4.33215 4.46803 4.54397 4.63481 4.73577 4.84091 4.88267 4.92453 5.05790 5.11430 5.20958 5.34741 5.46751 5.59311 5.60620 5.73112 5.93962 6.10202 6.18002 6.28212 6.41657 6.87031 7.27442 7.42886 8.94361 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039620 B = 0.005745 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.551535 B = 4872.881405 C = 5182.427030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.052 3.948 10 H -0.014 1.014 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.073 3.927 14 N -0.574 5.574 15 C 0.286 3.714 16 N -0.632 5.632 17 C 0.109 3.891 18 C -0.151 4.151 19 C 0.503 3.497 20 O -0.573 6.573 21 C 0.089 3.911 22 H 0.261 0.739 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.045 0.955 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 -18.424 -5.506 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.033 3.967 10 H 0.004 0.996 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.054 4.054 14 N -0.301 5.301 15 C 0.076 3.924 16 N -0.370 5.370 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.291 3.709 20 O -0.450 6.450 21 C -0.039 4.039 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.064 0.936 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.486 -17.941 -4.631 18.536 hybrid contribution 0.901 1.682 -0.299 1.931 sum 1.387 -16.260 -4.930 17.047 Atomic orbital electron populations 1.70037 1.07264 1.27209 1.51059 1.25742 0.95674 1.02435 0.94640 0.85644 0.78406 0.78950 0.78840 1.19260 1.20821 1.19972 1.21490 0.93016 0.92149 1.51127 0.92960 1.18585 0.92992 0.91362 0.93715 0.99569 1.21443 0.99059 0.96389 0.97207 1.21585 0.97589 0.94951 1.00725 1.22048 0.94977 0.99044 0.89365 1.61646 1.26172 1.02450 1.39856 1.21746 0.89656 0.82393 0.98649 1.51529 1.53310 1.24629 1.07514 1.23300 0.96503 0.85180 0.96079 1.23878 1.02931 0.97903 0.94370 1.23458 0.78323 0.86319 0.82760 1.90684 1.58249 1.69256 1.26846 1.21879 0.95316 0.88245 0.98473 0.93016 0.92558 0.95224 0.94015 0.90659 0.94496 0.89189 0.91343 0.89898 0.86127 0.88247 0.85445 0.84155 0.93596 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 11.36 21.45 0.24 -54.34 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.80 8.56 25.60 0.22 -30.58 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.05 2.77 2.26 -11.48 -0.03 2.74 16 10 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C -0.10 -4.95 5.03 30.68 0.15 -4.80 16 12 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 13 C 0.07 2.28 5.31 86.33 0.46 2.74 16 14 N -0.57 -21.01 4.75 -908.72 -4.32 -25.32 16 15 C 0.29 8.32 6.57 170.81 1.12 9.44 16 16 N -0.63 -15.73 3.47 -847.74 -2.95 -18.67 16 17 C 0.11 1.37 8.82 86.35 0.76 2.13 16 18 C -0.15 -2.07 8.29 30.37 0.25 -1.82 16 19 C 0.50 14.58 9.65 87.64 0.85 15.43 16 20 O -0.57 -23.40 18.03 -3.03 -0.05 -23.46 16 21 C 0.09 3.88 4.62 86.33 0.40 4.28 16 22 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 23 H 0.06 3.09 6.17 -2.39 -0.01 3.08 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.21 6.75 -2.39 -0.02 2.20 16 29 H 0.07 2.22 7.71 -2.38 -0.02 2.20 16 30 H 0.08 1.91 7.92 -2.39 -0.02 1.89 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.06 7.25 -2.39 -0.02 1.04 16 33 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 2.09 7.91 -2.39 -0.02 2.07 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -75.04 292.01 0.82 -74.22 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.05 Total: 4.12 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.82 Total: -3.20 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -7.02 Total: -98.34 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.04 0.82 -74.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857236211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.191 kcal (2) G-P(sol) polarization free energy of solvation -75.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds