Wall clock time and date at job start Sun Mar 29 2020 22:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.52991 * 109.47219 * 60.00002 * 3 2 1 5 5 C 1.53005 * 109.46880 * 299.99885 * 3 2 1 6 6 C 1.50703 * 109.47113 * 180.02562 * 3 2 1 7 7 N 1.29943 * 126.28458 * 359.97368 * 6 3 2 8 8 O 1.21306 * 110.24928 * 180.02562 * 7 6 3 9 9 C 1.33647 * 109.81156 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55279 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46561 * 60.02919 * 10 9 8 13 13 C 1.50697 * 109.46993 * 300.03120 * 10 9 8 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 N 1.31133 * 106.89296 * 0.22969 * 9 8 7 22 22 H 1.09005 * 109.47142 * 300.00150 * 1 2 3 23 23 H 1.09003 * 109.47268 * 59.99785 * 1 2 3 24 24 H 1.09003 * 109.47767 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47142 * 239.99850 * 2 1 3 26 26 H 1.09002 * 109.47026 * 119.99723 * 2 1 3 27 27 H 1.09001 * 109.47336 * 180.02562 * 4 3 2 28 28 H 1.09005 * 109.47339 * 299.99778 * 4 3 2 29 29 H 1.09002 * 109.47350 * 60.00052 * 4 3 2 30 30 H 1.08996 * 109.47422 * 299.99984 * 5 3 2 31 31 H 1.09000 * 109.47259 * 60.00010 * 5 3 2 32 32 H 1.09001 * 109.46884 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.46531 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.47109 * 299.99601 * 12 10 9 35 35 H 1.08994 * 109.47204 * 59.99959 * 12 10 9 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1637 -1.2493 6 6 3.5470 1.4425 -0.0006 7 7 4.3160 0.3950 -0.0006 8 8 5.4818 0.7301 -0.0007 9 6 5.5699 2.0637 -0.0013 10 6 6.8369 2.8795 -0.0011 11 1 6.5861 3.9402 -0.0013 12 6 7.6564 2.5489 -1.2502 13 6 7.6436 2.5542 1.2295 14 1 7.2735 1.8325 1.9426 15 6 8.8518 3.1818 1.4476 16 7 9.3027 4.0602 0.5789 17 14 9.8480 2.7842 2.9769 18 1 10.7689 1.6556 2.6883 19 1 10.6371 3.9768 3.3775 20 1 8.9302 2.4043 4.0808 21 7 4.3430 2.5265 0.0034 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8930 3.1916 1.2489 28 1 0.4400 2.1638 1.2492 29 1 1.8933 1.6499 2.1392 30 1 1.8932 1.6499 -2.1393 31 1 0.4399 2.1637 -1.2493 32 1 1.8929 3.1915 -1.2491 33 1 8.5727 3.1394 -1.2503 34 1 7.9072 1.4882 -1.2500 35 1 7.0729 2.7842 -2.1403 36 1 10.1529 4.5014 0.7322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867169738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:31 Heat of formation + Delta-G solvation = 37.539537 kcal Electronic energy + Delta-G solvation = -17313.678924 eV Core-core repulsion = 14607.396981 eV Total energy + Delta-G solvation = -2706.281943 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.67813 -37.94915 -35.11762 -34.10699 -31.78624 -30.08519 -29.61399 -27.26415 -25.38419 -25.00879 -23.26439 -22.62068 -20.75530 -18.55329 -17.26848 -16.64638 -15.98478 -15.29524 -14.88494 -14.67469 -14.08363 -13.63604 -13.32401 -12.94865 -12.30238 -12.16816 -11.89947 -11.80993 -11.66373 -11.29006 -11.20953 -11.09103 -10.98888 -10.90149 -10.73675 -10.59792 -10.41932 -10.30875 -10.19634 -9.99701 -9.43353 -8.83347 -8.56641 -6.21420 -4.30555 2.06755 3.05892 3.24215 3.30734 3.35351 3.89863 4.14295 4.31537 4.56633 4.92426 5.08049 5.09647 5.20657 5.30623 5.40171 5.57522 5.72941 5.80168 5.89931 5.92432 5.93876 6.01610 6.16769 6.21698 6.39281 6.42902 6.58313 6.62776 6.73438 6.88592 6.90135 7.39827 7.63182 7.81429 8.01754 8.68662 9.05669 9.35552 10.84719 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.005760 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.213843 B = 4859.562348 C = 5036.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.033 3.967 4 C -0.138 4.138 5 C -0.137 4.137 6 C 0.166 3.834 7 N -0.410 5.410 8 O 0.065 5.935 9 C 0.241 3.759 10 C 0.125 3.875 11 H 0.074 0.926 12 C -0.138 4.138 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.513 5.513 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.039 0.961 35 H 0.016 0.984 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.586 -3.883 -1.965 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C 0.031 3.969 4 C -0.196 4.196 5 C -0.195 4.195 6 C -0.107 4.107 7 N -0.122 5.122 8 O 0.012 5.988 9 C 0.023 3.977 10 C 0.105 3.895 11 H 0.092 0.908 12 C -0.197 4.197 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.198 1.198 21 N -0.246 5.246 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.028 -4.257 -1.993 13.850 hybrid contribution 0.824 -0.154 0.830 1.179 sum -12.204 -4.410 -1.163 13.028 Atomic orbital electron populations 1.21894 0.95376 1.01635 1.02117 1.21487 0.95745 0.94541 1.03006 1.18829 0.83541 0.96924 0.97574 1.21874 1.00738 1.01148 0.95820 1.21871 1.00800 1.01072 0.95772 1.25572 0.99136 0.84700 1.01299 1.74502 0.89919 1.24489 1.23313 1.85246 1.21390 1.26067 1.66122 1.30149 0.97471 0.81094 0.89026 1.17802 0.81656 0.93128 0.96919 0.90817 1.21853 1.02433 1.01285 0.94098 1.20875 1.04413 1.25444 1.05373 0.92023 1.24876 0.97069 0.94360 0.96991 1.69853 1.20743 1.26430 1.35165 0.86387 0.79930 0.78004 0.82573 1.20271 1.20919 1.19767 1.71885 1.00020 1.29003 1.23696 0.92281 0.92300 0.92709 0.91537 0.91506 0.91391 0.91490 0.92668 0.92742 0.91473 0.91436 0.88072 0.94229 0.96489 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.21 37.15 0.34 -1.15 16 2 C -0.11 -1.43 4.49 -26.73 -0.12 -1.55 16 3 C 0.03 0.49 0.77 -155.66 -0.12 0.37 16 4 C -0.14 -1.86 8.10 37.15 0.30 -1.55 16 5 C -0.14 -1.79 8.10 37.16 0.30 -1.49 16 6 C 0.17 3.28 6.40 -156.38 -1.00 2.27 16 7 N -0.41 -8.68 11.47 30.90 0.35 -8.32 16 8 O 0.07 1.50 11.31 18.09 0.20 1.70 16 9 C 0.24 5.61 6.96 -13.05 -0.09 5.52 16 10 C 0.13 3.09 2.77 -92.92 -0.26 2.83 16 11 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 12 C -0.14 -3.18 8.95 37.16 0.33 -2.85 16 13 C -0.52 -13.86 8.55 -34.44 -0.29 -14.16 16 14 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 15 C 0.07 1.84 5.31 -17.82 -0.09 1.74 16 16 N -0.88 -23.63 11.31 55.43 0.63 -23.01 16 17 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 N -0.51 -11.31 11.55 -9.87 -0.11 -11.42 16 22 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 23 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.49 6.06 -51.93 -0.31 2.17 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -27.45 295.35 -5.62 -33.06 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.42 Total: -1.94 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.70 Total: -10.01 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.87 Total: -42.75 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.45 -5.62 -33.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867169738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.604 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds