Wall clock time and date at job start Sun Mar 29 2020 22:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.52991 * 109.47219 * 60.00002 * 3 2 1 5 5 C 1.53005 * 109.46880 * 299.99885 * 3 2 1 6 6 C 1.50703 * 109.47113 * 180.02562 * 3 2 1 7 7 N 1.29943 * 126.28458 * 359.97368 * 6 3 2 8 8 O 1.21306 * 110.24928 * 180.02562 * 7 6 3 9 9 C 1.33647 * 109.81156 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55279 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46561 * 60.02919 * 10 9 8 13 13 C 1.50697 * 109.46993 * 300.03120 * 10 9 8 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 N 1.31133 * 106.89296 * 0.22969 * 9 8 7 22 22 H 1.09005 * 109.47142 * 300.00150 * 1 2 3 23 23 H 1.09003 * 109.47268 * 59.99785 * 1 2 3 24 24 H 1.09003 * 109.47767 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47142 * 239.99850 * 2 1 3 26 26 H 1.09002 * 109.47026 * 119.99723 * 2 1 3 27 27 H 1.09001 * 109.47336 * 180.02562 * 4 3 2 28 28 H 1.09005 * 109.47339 * 299.99778 * 4 3 2 29 29 H 1.09002 * 109.47350 * 60.00052 * 4 3 2 30 30 H 1.08996 * 109.47422 * 299.99984 * 5 3 2 31 31 H 1.09000 * 109.47259 * 60.00010 * 5 3 2 32 32 H 1.09001 * 109.46884 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.46531 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.47109 * 299.99601 * 12 10 9 35 35 H 1.08994 * 109.47204 * 59.99959 * 12 10 9 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1637 -1.2493 6 6 3.5470 1.4425 -0.0006 7 7 4.3160 0.3950 -0.0006 8 8 5.4818 0.7301 -0.0007 9 6 5.5699 2.0637 -0.0013 10 6 6.8369 2.8795 -0.0011 11 1 6.5861 3.9402 -0.0013 12 6 7.6564 2.5489 -1.2502 13 6 7.6436 2.5542 1.2295 14 1 7.2735 1.8325 1.9426 15 6 8.8518 3.1818 1.4476 16 7 9.3027 4.0602 0.5789 17 14 9.8480 2.7842 2.9769 18 1 10.7689 1.6556 2.6883 19 1 10.6371 3.9768 3.3775 20 1 8.9302 2.4043 4.0808 21 7 4.3430 2.5265 0.0034 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8930 3.1916 1.2489 28 1 0.4400 2.1638 1.2492 29 1 1.8933 1.6499 2.1392 30 1 1.8932 1.6499 -2.1393 31 1 0.4399 2.1637 -1.2493 32 1 1.8929 3.1915 -1.2491 33 1 8.5727 3.1394 -1.2503 34 1 7.9072 1.4882 -1.2500 35 1 7.0729 2.7842 -2.1403 36 1 10.1529 4.5014 0.7322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867169738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:30 Heat of formation + Delta-G solvation = 21.273164 kcal Electronic energy + Delta-G solvation = -17314.384287 eV Core-core repulsion = 14607.396981 eV Total energy + Delta-G solvation = -2706.987306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.38377 -39.14684 -36.99723 -35.79474 -33.64118 -31.45402 -31.05448 -28.31757 -27.38664 -26.27388 -25.08051 -23.98693 -22.43105 -19.93469 -19.01268 -18.37988 -17.89035 -16.88769 -16.41954 -15.68111 -15.65207 -15.08420 -14.82857 -14.31199 -13.78155 -13.44336 -13.25278 -13.08030 -13.04461 -12.89176 -12.86758 -12.61681 -12.50279 -12.30699 -12.20272 -12.12778 -12.08119 -11.88239 -11.58305 -11.48419 -11.30266 -10.65330 -10.56021 -8.22783 -6.39477 0.30756 1.37572 1.44297 1.46295 1.55729 2.10185 2.39231 2.72512 3.06283 3.18137 3.82252 3.84973 3.95331 4.33262 4.39576 4.53893 4.65283 4.69157 4.70017 4.74817 4.86402 4.88317 4.90133 4.98334 5.06164 5.07161 5.08803 5.19466 5.21436 5.37620 5.39883 5.52084 5.63793 5.82258 6.03512 6.61908 7.29696 7.31280 8.82938 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.005760 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.213843 B = 4859.562348 C = 5036.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C 0.026 3.974 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.174 3.826 7 N -0.419 5.419 8 O 0.048 5.952 9 C 0.230 3.770 10 C 0.127 3.873 11 H 0.054 0.946 12 C -0.127 4.127 13 C -0.544 4.544 14 H 0.049 0.951 15 C 0.032 3.968 16 N -0.904 5.904 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.276 1.276 21 N -0.522 5.522 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 -4.225 -1.736 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C 0.024 3.976 4 C -0.192 4.192 5 C -0.190 4.190 6 C -0.100 4.100 7 N -0.134 5.134 8 O -0.002 6.002 9 C 0.011 3.989 10 C 0.107 3.893 11 H 0.071 0.929 12 C -0.185 4.185 13 C -0.583 4.583 14 H 0.068 0.932 15 C -0.169 4.169 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.256 5.256 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.625 -4.604 -1.775 15.435 hybrid contribution 1.259 -0.041 0.742 1.462 sum -13.366 -4.645 -1.032 14.188 Atomic orbital electron populations 1.21873 0.92215 1.02926 1.03351 1.21466 0.98372 0.92754 1.01783 1.19264 0.80254 0.98810 0.99286 1.21881 1.03097 0.99720 0.94477 1.21874 1.03075 0.99732 0.94352 1.26567 1.01205 0.83419 0.98760 1.74499 0.89504 1.24951 1.24447 1.85227 1.22430 1.25751 1.66766 1.29884 0.97553 0.81444 0.89975 1.17608 0.82346 0.92233 0.97129 0.92862 1.21695 1.01688 1.00946 0.94194 1.21024 1.05322 1.25807 1.06098 0.93238 1.25571 0.97732 0.94062 0.99578 1.69935 1.21131 1.26691 1.36336 0.85469 0.78462 0.78161 0.79091 1.19507 1.20014 1.20046 1.71901 0.99928 1.29976 1.23762 0.91109 0.90874 0.91552 0.92613 0.92986 0.92841 0.87644 0.93758 0.93293 0.87742 0.92748 0.89608 0.94103 0.94703 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.21 71.98 0.66 -1.65 16 2 C -0.11 -2.56 4.49 30.59 0.14 -2.42 16 3 C 0.03 0.72 0.77 -52.93 -0.04 0.68 16 4 C -0.13 -3.33 8.10 71.98 0.58 -2.75 16 5 C -0.13 -3.14 8.10 71.98 0.58 -2.56 16 6 C 0.17 6.82 6.40 138.47 0.89 7.71 16 7 N -0.42 -17.87 11.47 -60.31 -0.69 -18.56 16 8 O 0.05 2.23 11.31 74.79 0.85 3.07 16 9 C 0.23 10.95 6.96 88.38 0.61 11.56 16 10 C 0.13 6.43 2.77 -12.29 -0.03 6.40 16 11 H 0.05 2.88 8.14 -2.39 -0.02 2.86 16 12 C -0.13 -5.91 8.95 71.98 0.64 -5.27 16 13 C -0.54 -29.45 8.55 25.60 0.22 -29.23 16 14 H 0.05 2.73 7.74 -2.92 -0.02 2.71 16 15 C 0.03 1.68 5.31 84.66 0.45 2.13 16 16 N -0.90 -48.51 11.31 21.45 0.24 -48.27 16 17 Si 0.96 41.94 29.54 68.60 2.03 43.97 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 N -0.52 -23.26 11.55 -303.19 -3.50 -26.76 16 22 H 0.07 0.97 6.43 -2.38 -0.02 0.95 16 23 H 0.07 0.96 6.43 -2.39 -0.02 0.95 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.11 1.80 6.43 -2.38 -0.02 1.79 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.69 6.43 -2.39 -0.02 1.68 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 4.28 6.06 -2.38 -0.01 4.26 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -59.14 295.35 4.68 -54.45 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.71 Total: -15.39 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.95 Total: -93.59 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -59.14 4.68 -54.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867169738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.726 kcal (2) G-P(sol) polarization free energy of solvation -59.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds