Wall clock time and date at job start Sun Mar 29 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46794 * 2 1 4 4 C 1.52998 * 109.46740 * 119.99649 * 2 1 3 5 5 C 1.53003 * 109.46903 * 175.00061 * 4 2 1 6 6 C 1.50705 * 109.47186 * 180.02562 * 5 4 2 7 7 N 1.27564 * 126.41662 * 359.97438 * 6 5 4 8 8 N 1.39147 * 113.16512 * 180.02562 * 7 6 5 9 9 C 1.46500 * 124.43935 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46949 * 270.02971 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.34948 * 111.11992 * 0.27241 * 8 7 6 19 19 O 1.21301 * 127.50168 * 179.70967 * 18 8 7 20 20 C 1.51440 * 126.41274 * 180.02562 * 6 5 4 21 21 H 1.09003 * 109.47170 * 300.00001 * 1 2 3 22 22 H 1.08997 * 109.47133 * 59.99914 * 1 2 3 23 23 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47150 * 239.99623 * 2 1 3 25 25 H 1.09004 * 109.46189 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46954 * 299.99616 * 3 2 1 27 27 H 1.08994 * 109.47088 * 59.99985 * 3 2 1 28 28 H 1.09000 * 109.47504 * 55.00324 * 4 2 1 29 29 H 1.08995 * 109.47403 * 294.99858 * 4 2 1 30 30 H 1.09001 * 109.47317 * 60.00036 * 5 4 2 31 31 H 1.09005 * 109.46819 * 299.99983 * 5 4 2 32 32 H 1.09000 * 109.47175 * 150.02997 * 9 8 7 33 33 H 1.09001 * 109.47297 * 30.02505 * 9 8 7 34 34 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 35 35 H 1.08993 * 110.60779 * 298.47835 * 20 6 5 36 36 H 1.08995 * 110.60749 * 61.29849 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0671 -1.5419 2.4183 7 7 3.3553 -1.9918 3.3766 8 7 4.1063 -2.6014 4.3768 9 6 3.5413 -3.2010 5.5883 10 6 3.4642 -2.1597 6.6751 11 1 3.8065 -1.1534 6.4840 12 6 2.9616 -2.4933 7.9149 13 7 2.8948 -1.5848 8.8634 14 14 2.3768 -4.2359 8.2477 15 1 3.5083 -5.0478 8.7632 16 1 1.2874 -4.2082 9.2565 17 1 1.8698 -4.8369 6.9880 18 6 5.4239 -2.5623 4.0878 19 8 6.3392 -2.9994 4.7532 20 6 5.5114 -1.8550 2.7489 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6054 -1.7197 1.2953 29 1 1.7516 -0.1582 2.1370 30 1 3.9995 0.1675 1.1421 31 1 3.8531 -1.3940 0.3003 32 1 4.1768 -4.0231 5.9172 33 1 2.5411 -3.5778 5.3746 34 1 2.5415 -1.8196 9.7358 35 1 5.9447 -2.5098 1.9930 36 1 6.0922 -0.9370 2.8382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871941800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:41 Heat of formation + Delta-G solvation = -4.260919 kcal Electronic energy + Delta-G solvation = -16743.558488 eV Core-core repulsion = 14035.463941 eV Total energy + Delta-G solvation = -2708.094547 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57532 -37.37719 -36.43908 -33.82758 -32.29293 -30.39128 -28.75451 -27.36752 -27.19024 -24.21460 -22.36841 -20.62164 -20.00760 -18.53365 -17.07934 -16.12296 -15.83489 -15.24790 -14.88088 -14.41272 -14.29123 -13.94742 -13.71652 -13.35882 -12.70547 -12.46250 -12.38454 -12.30175 -11.97537 -11.81761 -11.77939 -11.38676 -10.93242 -10.87498 -10.66691 -10.65974 -10.56057 -10.30855 -10.07750 -9.57213 -9.11535 -8.65989 -7.83091 -6.15163 -4.15870 2.05526 3.12742 3.25074 3.29517 3.32323 3.36706 4.16804 4.33205 4.37512 4.83227 4.85061 4.92997 5.15570 5.19287 5.27795 5.46490 5.48260 5.50763 5.56618 5.62594 5.76000 5.81315 5.93730 6.01917 6.03812 6.18123 6.29176 6.36915 6.46485 6.64648 6.93204 7.10424 7.45731 8.30369 8.38797 8.59860 8.87188 9.41931 10.98022 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.006024 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.909153 B = 4647.290539 C = 5365.039374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.113 4.113 5 C -0.036 4.036 6 C 0.052 3.948 7 N -0.209 5.209 8 N -0.440 5.440 9 C 0.238 3.762 10 C -0.536 4.536 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.892 5.892 14 Si 0.875 3.125 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.491 3.509 19 O -0.508 6.508 20 C -0.172 4.172 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.267 0.733 35 H 0.123 0.877 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 2.445 -19.660 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.209 4.209 4 C -0.150 4.150 5 C -0.075 4.075 6 C -0.142 4.142 7 N -0.017 5.017 8 N -0.259 5.259 9 C 0.119 3.881 10 C -0.574 4.574 11 H 0.094 0.906 12 C -0.127 4.127 13 N -0.530 5.530 14 Si 0.702 3.298 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C 0.278 3.722 19 O -0.381 6.381 20 C -0.214 4.214 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.272 2.003 -18.507 18.753 hybrid contribution 0.498 -0.710 0.292 0.915 sum -1.774 1.293 -18.215 18.347 Atomic orbital electron populations 1.21834 0.95311 1.01775 1.01612 1.21131 0.95802 0.96281 0.98291 1.21925 1.01146 0.96114 1.01673 1.21566 0.93760 1.01640 0.98078 1.20151 0.96563 0.99374 0.91387 1.25104 0.91944 1.00372 0.96737 1.74535 1.24540 1.05806 0.96818 1.50018 1.04368 1.52424 1.19067 1.19769 0.94790 0.94065 0.79443 1.21239 1.43233 0.97842 0.95093 0.90635 1.24813 0.94911 0.97422 0.95585 1.69887 1.45571 1.33732 1.03837 0.86859 0.79161 0.84962 0.78863 1.19728 1.20656 1.18837 1.21198 0.83676 0.80038 0.87303 1.90724 1.41630 1.48944 1.56842 1.22058 0.97562 1.03757 0.98042 0.92505 0.93043 0.92686 0.91360 0.92399 0.93089 0.92494 0.91162 0.90818 0.89320 0.89637 0.93930 0.93668 0.92328 0.85899 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.10 -0.82 2.92 -90.62 -0.26 -1.09 16 3 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 4 C -0.11 -1.21 4.19 -26.73 -0.11 -1.33 16 5 C -0.04 -0.36 5.59 -27.88 -0.16 -0.51 16 6 C 0.05 0.76 7.28 -78.73 -0.57 0.18 16 7 N -0.21 -4.07 11.33 35.53 0.40 -3.67 16 8 N -0.44 -10.10 3.52 -61.06 -0.22 -10.31 16 9 C 0.24 6.13 5.06 -5.19 -0.03 6.10 16 10 C -0.54 -15.94 9.94 -34.44 -0.34 -16.28 16 11 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 13 N -0.89 -27.77 13.96 55.43 0.77 -27.00 16 14 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 18 C 0.49 10.60 8.43 -10.43 -0.09 10.51 16 19 O -0.51 -12.64 17.82 5.54 0.10 -12.54 16 20 C -0.17 -2.53 6.93 -28.19 -0.20 -2.72 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.74 6.56 -51.93 -0.34 0.40 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 1.10 7.47 -51.93 -0.39 0.72 16 33 H 0.05 1.13 7.20 -51.93 -0.37 0.75 16 34 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -34.44 302.52 -5.91 -40.35 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.68 Total: -3.47 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.18 Total: -4.78 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.96 Total: -40.98 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.10 Total: -12.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.44 -5.91 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871941800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.091 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds