Wall clock time and date at job start Sun Mar 29 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46794 * 2 1 4 4 C 1.52998 * 109.46740 * 119.99649 * 2 1 3 5 5 C 1.53003 * 109.46903 * 175.00061 * 4 2 1 6 6 C 1.50705 * 109.47186 * 180.02562 * 5 4 2 7 7 N 1.27564 * 126.41662 * 359.97438 * 6 5 4 8 8 N 1.39147 * 113.16512 * 180.02562 * 7 6 5 9 9 C 1.46500 * 124.43935 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46949 * 270.02971 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.34948 * 111.11992 * 0.27241 * 8 7 6 19 19 O 1.21301 * 127.50168 * 179.70967 * 18 8 7 20 20 C 1.51440 * 126.41274 * 180.02562 * 6 5 4 21 21 H 1.09003 * 109.47170 * 300.00001 * 1 2 3 22 22 H 1.08997 * 109.47133 * 59.99914 * 1 2 3 23 23 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47150 * 239.99623 * 2 1 3 25 25 H 1.09004 * 109.46189 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46954 * 299.99616 * 3 2 1 27 27 H 1.08994 * 109.47088 * 59.99985 * 3 2 1 28 28 H 1.09000 * 109.47504 * 55.00324 * 4 2 1 29 29 H 1.08995 * 109.47403 * 294.99858 * 4 2 1 30 30 H 1.09001 * 109.47317 * 60.00036 * 5 4 2 31 31 H 1.09005 * 109.46819 * 299.99983 * 5 4 2 32 32 H 1.09000 * 109.47175 * 150.02997 * 9 8 7 33 33 H 1.09001 * 109.47297 * 30.02505 * 9 8 7 34 34 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 35 35 H 1.08993 * 110.60779 * 298.47835 * 20 6 5 36 36 H 1.08995 * 110.60749 * 61.29849 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0671 -1.5419 2.4183 7 7 3.3553 -1.9918 3.3766 8 7 4.1063 -2.6014 4.3768 9 6 3.5413 -3.2010 5.5883 10 6 3.4642 -2.1597 6.6751 11 1 3.8065 -1.1534 6.4840 12 6 2.9616 -2.4933 7.9149 13 7 2.8948 -1.5848 8.8634 14 14 2.3768 -4.2359 8.2477 15 1 3.5083 -5.0478 8.7632 16 1 1.2874 -4.2082 9.2565 17 1 1.8698 -4.8369 6.9880 18 6 5.4239 -2.5623 4.0878 19 8 6.3392 -2.9994 4.7532 20 6 5.5114 -1.8550 2.7489 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6054 -1.7197 1.2953 29 1 1.7516 -0.1582 2.1370 30 1 3.9995 0.1675 1.1421 31 1 3.8531 -1.3940 0.3003 32 1 4.1768 -4.0231 5.9172 33 1 2.5411 -3.5778 5.3746 34 1 2.5415 -1.8196 9.7358 35 1 5.9447 -2.5098 1.9930 36 1 6.0922 -0.9370 2.8382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871941800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:41 Heat of formation + Delta-G solvation = -28.264139 kcal Electronic energy + Delta-G solvation = -16744.599346 eV Core-core repulsion = 14035.463941 eV Total energy + Delta-G solvation = -2709.135405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06334 -38.69278 -37.55827 -35.70076 -34.08847 -31.71084 -30.15318 -29.05563 -27.87855 -25.42112 -24.14995 -22.08422 -20.78220 -19.95778 -19.29303 -17.81090 -17.23464 -16.33186 -16.26100 -16.00803 -15.59573 -15.18596 -14.87621 -14.60481 -14.28351 -13.97770 -13.73221 -13.70312 -13.24827 -12.96772 -12.82736 -12.59251 -12.54847 -12.19351 -11.93420 -11.88688 -11.71910 -11.51575 -11.36362 -11.30141 -10.93166 -10.63134 -9.50933 -8.43922 -6.52576 0.74685 1.28368 1.31984 1.41598 1.59136 1.78693 2.23907 2.86052 2.96740 3.12720 3.90474 4.09994 4.14005 4.21302 4.35194 4.50259 4.56669 4.62479 4.64757 4.75668 4.85510 4.91933 4.98976 5.09598 5.19667 5.24570 5.28492 5.30481 5.34547 5.43219 5.49788 5.65769 5.69808 6.07750 6.46394 6.78342 7.01645 7.13160 8.73346 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.006024 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.909153 B = 4647.290539 C = 5365.039374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.035 4.035 6 C 0.095 3.905 7 N -0.266 5.266 8 N -0.463 5.463 9 C 0.247 3.753 10 C -0.550 4.550 11 H 0.022 0.978 12 C 0.016 3.984 13 N -0.940 5.940 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.242 1.242 18 C 0.467 3.533 19 O -0.560 6.560 20 C -0.157 4.157 21 H 0.040 0.960 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.273 0.727 35 H 0.170 0.830 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 1.823 -22.885 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.098 4.098 7 N -0.073 5.073 8 N -0.279 5.279 9 C 0.126 3.874 10 C -0.588 4.588 11 H 0.041 0.959 12 C -0.183 4.183 13 N -0.579 5.579 14 Si 0.774 3.226 15 H -0.190 1.190 16 H -0.193 1.193 17 H -0.165 1.165 18 C 0.256 3.744 19 O -0.438 6.438 20 C -0.198 4.198 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.188 0.812 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.198 1.409 -21.779 21.935 hybrid contribution 0.483 -0.333 1.159 1.299 sum -1.715 1.076 -20.619 20.719 Atomic orbital electron populations 1.21867 0.95855 1.01581 1.01554 1.21096 0.95387 0.96591 0.97707 1.21942 1.02017 0.95519 1.01462 1.21528 0.94703 1.00699 0.98106 1.20529 0.95672 1.00850 0.90240 1.26147 0.91799 0.95871 0.95943 1.74660 1.24810 1.09844 0.98030 1.50014 1.05411 1.53238 1.19275 1.19356 0.95184 0.92783 0.80037 1.21403 1.43538 0.96667 0.97222 0.95948 1.25884 0.94639 1.02892 0.94913 1.70038 1.46640 1.36592 1.04616 0.85650 0.78996 0.78212 0.79776 1.18967 1.19312 1.16498 1.22379 0.82658 0.79812 0.89540 1.90673 1.42695 1.51394 1.59069 1.22172 0.97946 1.04926 0.94712 0.94032 0.91663 0.92989 0.89123 0.90992 0.91973 0.94130 0.92544 0.93937 0.86471 0.85207 0.94468 0.92918 0.91791 0.81235 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.25 2.92 -10.79 -0.03 -1.28 16 3 C -0.15 -1.95 8.95 71.98 0.64 -1.31 16 4 C -0.11 -2.19 4.19 30.59 0.13 -2.06 16 5 C -0.03 -0.53 5.59 29.85 0.17 -0.36 16 6 C 0.09 2.51 7.28 46.83 0.34 2.85 16 7 N -0.27 -10.28 11.33 -40.84 -0.46 -10.74 16 8 N -0.46 -21.64 3.52 -465.38 -1.64 -23.28 16 9 C 0.25 13.10 5.06 85.63 0.43 13.53 16 10 C -0.55 -34.40 9.94 25.60 0.25 -34.15 16 11 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 12 C 0.02 0.96 5.47 84.66 0.46 1.42 16 13 N -0.94 -60.69 13.96 21.45 0.30 -60.39 16 14 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 15 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 18 C 0.47 20.19 8.43 87.94 0.74 20.93 16 19 O -0.56 -28.66 17.82 -3.10 -0.06 -28.71 16 20 C -0.16 -4.07 6.93 29.65 0.21 -3.86 16 21 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.71 6.56 -2.39 -0.02 0.70 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.30 6.56 -2.39 -0.02 1.29 16 31 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.04 1.98 7.47 -2.39 -0.02 1.96 16 33 H 0.05 2.66 7.20 -2.39 -0.02 2.64 16 34 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 35 H 0.17 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -82.24 302.52 5.02 -77.22 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.99 Total: 4.96 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 4.01 Total: -6.00 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -1.80 Total: -94.41 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.71 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -82.24 5.02 -77.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871941800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.952 kcal (2) G-P(sol) polarization free energy of solvation -82.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds