Wall clock time and date at job start Sun Mar 29 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99853 * 2 1 4 4 C 1.52995 * 109.47440 * 125.00048 * 3 2 1 5 5 H 1.09000 * 110.88630 * 51.11452 * 4 3 2 6 6 C 1.55154 * 111.00798 * 175.00051 * 4 3 2 7 7 C 1.54318 * 102.94369 * 153.61671 * 6 4 3 8 8 N 1.47021 * 107.27184 * 337.80419 * 7 6 4 9 9 C 1.34779 * 125.65050 * 178.90958 * 8 7 6 10 10 O 1.21578 * 120.00007 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99815 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00016 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47115 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47424 * 108.69953 * 359.17114 * 8 7 6 22 22 H 1.08002 * 120.00321 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00009 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99795 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47494 * 4.99992 * 3 2 1 26 26 H 1.09005 * 109.46809 * 245.00182 * 3 2 1 27 27 H 1.08994 * 110.72012 * 35.24927 * 6 4 3 28 28 H 1.09004 * 110.71914 * 271.97901 * 6 4 3 29 29 H 1.09011 * 109.88254 * 218.38774 * 7 6 4 30 30 H 1.08998 * 109.88920 * 97.22717 * 7 6 4 31 31 H 0.97001 * 119.99765 * 0.02562 * 11 9 8 32 32 H 1.09007 * 109.47078 * 59.99547 * 12 11 9 33 33 H 1.09003 * 109.46733 * 300.00270 * 12 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09005 * 110.36559 * 142.74260 * 21 8 7 36 36 H 1.08998 * 110.36697 * 265.05962 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6486 0.4325 1.2016 6 6 3.9189 2.6077 1.1447 7 6 4.2831 2.8189 2.6293 8 7 3.2648 2.1252 3.4315 9 6 3.2387 2.0548 4.7772 10 8 2.3444 1.4507 5.3370 11 7 4.2040 2.6541 5.5022 12 6 4.1759 2.5771 6.9649 13 6 5.3573 3.3227 7.5299 14 1 6.0592 3.8053 6.8659 15 6 5.5428 3.3879 8.8947 16 7 4.6884 2.7998 9.7032 17 14 7.0077 4.3116 9.5950 18 1 6.9791 4.2336 11.0777 19 1 8.2643 3.7019 9.0909 20 1 6.9436 5.7340 9.1733 21 6 2.2806 1.5140 2.5198 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6212 1.4026 -0.9314 27 1 3.3544 3.4576 0.7614 28 1 4.8153 2.4382 0.5481 29 1 4.2783 3.8834 2.8644 30 1 5.2669 2.3966 2.8335 31 1 4.9172 3.1363 5.0555 32 1 4.2235 1.5330 7.2748 33 1 3.2530 3.0240 7.3345 34 1 4.8192 2.8453 10.6633 35 1 1.9547 0.5481 2.9058 36 1 1.4261 2.1771 2.3843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:16 Heat of formation + Delta-G solvation = -21.414942 kcal Electronic energy + Delta-G solvation = -16636.065625 eV Core-core repulsion = 13927.227224 eV Total energy + Delta-G solvation = -2708.838401 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76997 -37.66177 -34.93875 -34.10187 -32.34361 -31.32815 -29.19700 -27.42087 -25.75739 -23.22682 -22.07760 -20.47486 -20.01200 -19.26318 -17.91154 -16.26981 -15.93069 -15.40441 -15.07051 -14.62146 -14.50066 -13.91353 -13.32536 -13.13967 -12.96551 -12.63075 -12.59720 -12.11407 -11.89096 -11.61236 -11.49563 -11.22946 -10.94335 -10.84452 -10.75970 -10.68042 -10.26866 -9.48473 -9.35538 -9.33726 -8.69266 -8.31724 -7.67267 -6.12155 -4.18736 2.12517 3.23819 3.27839 3.32731 3.35416 3.96251 4.32475 4.37933 4.57685 4.59724 4.92813 4.98126 5.10914 5.22836 5.23633 5.32368 5.39349 5.53956 5.67054 5.69915 5.75413 5.79231 5.96150 6.04602 6.20653 6.46338 6.58375 6.60843 7.25235 7.55797 7.61132 7.63214 7.93893 8.07251 8.79768 8.95890 9.37347 9.52275 10.98137 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052854 B = 0.004352 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.629716 B = 6431.685551 C = 6876.172572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.081 4.081 4 C -0.099 4.099 5 H 0.085 0.915 6 C -0.124 4.124 7 C 0.101 3.899 8 N -0.646 5.646 9 C 0.710 3.290 10 O -0.598 6.598 11 N -0.727 5.727 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.905 3.095 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.134 3.866 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.386 0.614 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 -1.175 -20.660 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.119 4.119 4 C -0.119 4.119 5 H 0.103 0.897 6 C -0.162 4.162 7 C -0.023 4.023 8 N -0.387 5.387 9 C 0.412 3.588 10 O -0.477 6.477 11 N -0.379 5.379 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.011 3.989 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.126 0.874 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.730 -1.648 -19.857 20.112 hybrid contribution 1.138 0.693 0.292 1.364 sum -1.592 -0.955 -19.565 19.653 Atomic orbital electron populations 1.23852 0.95995 1.01842 1.01361 1.22956 0.96077 0.98464 0.99710 1.20694 0.97754 0.95725 0.97703 1.22329 0.96702 0.98686 0.94139 0.89663 1.22668 1.00172 0.97958 0.95438 1.21907 0.92386 0.97254 0.90735 1.47632 1.28953 1.58217 1.03928 1.15702 0.83310 0.80536 0.79245 1.90868 1.38370 1.49037 1.69468 1.45724 1.26678 1.55908 1.09589 1.18984 0.97308 0.97476 0.71669 1.21188 1.09871 1.34912 0.92060 0.92048 1.24946 0.96795 0.95527 0.96738 1.69975 1.35837 1.42726 1.03769 0.86466 0.82351 0.80113 0.77907 1.21072 1.20091 1.20096 1.21928 0.91016 0.98497 0.87501 0.88611 0.88612 0.87396 0.91107 0.90529 0.90564 0.90162 0.91802 0.91829 0.78170 0.95751 0.95743 0.92418 0.90754 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 14.32 29.01 0.42 -1.22 16 2 C -0.15 -1.31 9.27 -36.03 -0.33 -1.65 16 3 C -0.08 -0.65 5.18 -27.89 -0.14 -0.79 16 4 C -0.10 -0.98 2.98 -88.60 -0.26 -1.24 16 5 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.12 -1.11 6.42 -24.90 -0.16 -1.27 16 7 C 0.10 1.26 6.15 -3.07 -0.02 1.24 16 8 N -0.65 -10.94 3.33 -176.38 -0.59 -11.53 16 9 C 0.71 15.99 8.49 -86.91 -0.74 15.25 16 10 O -0.60 -16.02 16.60 5.30 0.09 -15.93 16 11 N -0.73 -16.65 5.51 -66.42 -0.37 -17.01 16 12 C 0.27 7.42 5.43 -5.20 -0.03 7.39 16 13 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.13 1.89 6.12 -2.65 -0.02 1.87 16 22 H 0.10 0.77 7.84 -52.49 -0.41 0.35 16 23 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 24 H 0.11 0.87 8.06 -52.48 -0.42 0.44 16 25 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 7.68 7.31 -40.82 -0.30 7.38 16 32 H 0.02 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 36 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -33.49 304.43 -7.96 -41.44 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.69 Total: 2.35 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.70 Total: 5.83 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.22 Total: -54.40 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.49 -7.96 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.026 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds