Wall clock time and date at job start Sun Mar 29 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99853 * 2 1 4 4 C 1.52995 * 109.47440 * 125.00048 * 3 2 1 5 5 H 1.09000 * 110.88630 * 51.11452 * 4 3 2 6 6 C 1.55154 * 111.00798 * 175.00051 * 4 3 2 7 7 C 1.54318 * 102.94369 * 153.61671 * 6 4 3 8 8 N 1.47021 * 107.27184 * 337.80419 * 7 6 4 9 9 C 1.34779 * 125.65050 * 178.90958 * 8 7 6 10 10 O 1.21578 * 120.00007 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99815 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00016 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47115 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47424 * 108.69953 * 359.17114 * 8 7 6 22 22 H 1.08002 * 120.00321 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00009 * 180.02562 * 1 2 3 24 24 H 1.08003 * 119.99795 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47494 * 4.99992 * 3 2 1 26 26 H 1.09005 * 109.46809 * 245.00182 * 3 2 1 27 27 H 1.08994 * 110.72012 * 35.24927 * 6 4 3 28 28 H 1.09004 * 110.71914 * 271.97901 * 6 4 3 29 29 H 1.09011 * 109.88254 * 218.38774 * 7 6 4 30 30 H 1.08998 * 109.88920 * 97.22717 * 7 6 4 31 31 H 0.97001 * 119.99765 * 0.02562 * 11 9 8 32 32 H 1.09007 * 109.47078 * 59.99547 * 12 11 9 33 33 H 1.09003 * 109.46733 * 300.00270 * 12 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09005 * 110.36559 * 142.74260 * 21 8 7 36 36 H 1.08998 * 110.36697 * 265.05962 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6486 0.4325 1.2016 6 6 3.9189 2.6077 1.1447 7 6 4.2831 2.8189 2.6293 8 7 3.2648 2.1252 3.4315 9 6 3.2387 2.0548 4.7772 10 8 2.3444 1.4507 5.3370 11 7 4.2040 2.6541 5.5022 12 6 4.1759 2.5771 6.9649 13 6 5.3573 3.3227 7.5299 14 1 6.0592 3.8053 6.8659 15 6 5.5428 3.3879 8.8947 16 7 4.6884 2.7998 9.7032 17 14 7.0077 4.3116 9.5950 18 1 6.9791 4.2336 11.0777 19 1 8.2643 3.7019 9.0909 20 1 6.9436 5.7340 9.1733 21 6 2.2806 1.5140 2.5198 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6212 1.4026 -0.9314 27 1 3.3544 3.4576 0.7614 28 1 4.8153 2.4382 0.5481 29 1 4.2783 3.8834 2.8644 30 1 5.2669 2.3966 2.8335 31 1 4.9172 3.1363 5.0555 32 1 4.2235 1.5330 7.2748 33 1 3.2530 3.0240 7.3345 34 1 4.8192 2.8453 10.6633 35 1 1.9547 0.5481 2.9058 36 1 1.4261 2.1771 2.3843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:16 Heat of formation + Delta-G solvation = -44.279275 kcal Electronic energy + Delta-G solvation = -16637.057097 eV Core-core repulsion = 13927.227224 eV Total energy + Delta-G solvation = -2709.829873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24004 -39.01830 -36.16835 -35.85150 -34.35605 -32.50384 -30.16971 -29.32846 -26.96893 -24.78554 -23.73336 -21.35708 -21.03886 -20.63556 -19.51536 -18.03933 -17.44833 -16.94658 -16.44926 -16.03480 -15.92698 -15.08071 -14.84159 -14.33448 -14.21849 -13.95810 -13.78971 -13.68098 -13.56521 -12.92298 -12.80661 -12.66886 -12.30240 -12.20167 -12.06238 -11.54426 -11.52149 -11.41479 -11.26743 -10.80295 -10.12744 -10.07499 -9.40361 -8.28946 -6.46376 1.42918 1.46658 1.48266 1.56172 1.75142 2.16962 2.38854 3.05601 3.23957 3.61728 3.68750 3.84792 4.23395 4.29729 4.41032 4.46682 4.60984 4.69665 4.83399 4.89159 4.94707 5.00787 5.06983 5.13597 5.19899 5.23710 5.35614 5.44122 5.48535 5.71089 5.82808 5.83051 5.95045 6.21412 6.64658 7.15699 7.23792 7.66369 8.83465 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052854 B = 0.004352 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.629716 B = 6431.685551 C = 6876.172572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.074 4.074 4 C -0.085 4.085 5 H 0.087 0.913 6 C -0.110 4.110 7 C 0.088 3.912 8 N -0.641 5.641 9 C 0.703 3.297 10 O -0.652 6.652 11 N -0.720 5.720 12 C 0.286 3.714 13 C -0.557 4.557 14 H 0.083 0.917 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.989 3.011 18 H -0.284 1.284 19 H -0.261 1.261 20 H -0.261 1.261 21 C 0.125 3.875 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.403 0.597 32 H -0.016 1.016 33 H -0.016 1.016 34 H 0.270 0.730 35 H 0.048 0.952 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 0.288 -23.016 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.181 4.181 3 C -0.112 4.112 4 C -0.105 4.105 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.034 4.034 8 N -0.380 5.380 9 C 0.405 3.595 10 O -0.535 6.535 11 N -0.374 5.374 12 C 0.162 3.838 13 C -0.595 4.595 14 H 0.101 0.899 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.812 3.188 18 H -0.210 1.210 19 H -0.185 1.185 20 H -0.186 1.186 21 C 0.002 3.998 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.238 0.762 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.595 -0.166 -22.319 22.328 hybrid contribution 0.396 0.187 0.965 1.060 sum -0.198 0.021 -21.354 21.355 Atomic orbital electron populations 1.23994 0.96314 1.02252 1.01516 1.23131 0.96237 0.99135 0.99576 1.20683 0.97486 0.95335 0.97670 1.22267 0.96680 0.99498 0.92021 0.89497 1.22699 1.01401 0.97753 0.92893 1.22317 0.91415 0.97190 0.92495 1.47645 1.30413 1.57624 1.02274 1.15910 0.82455 0.80034 0.81135 1.90818 1.40233 1.51119 1.71356 1.45309 1.27655 1.56579 1.07841 1.18427 0.96058 0.94758 0.74510 1.21547 1.09974 1.35058 0.92910 0.89853 1.26110 1.00183 0.96219 0.97070 1.70148 1.38281 1.44241 1.04288 0.85147 0.77994 0.78927 0.76761 1.20983 1.18540 1.18555 1.22206 0.91417 0.97077 0.89097 0.88299 0.88342 0.87108 0.90802 0.87976 0.88871 0.87032 0.91036 0.91101 0.76179 0.99789 0.99780 0.92158 0.93313 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.25 14.32 67.78 0.97 -2.28 16 2 C -0.16 -2.50 9.27 25.64 0.24 -2.27 16 3 C -0.07 -0.95 5.18 29.84 0.15 -0.80 16 4 C -0.09 -1.45 2.98 -9.48 -0.03 -1.48 16 5 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 6 C -0.11 -1.51 6.42 31.78 0.20 -1.31 16 7 C 0.09 1.97 6.15 86.73 0.53 2.50 16 8 N -0.64 -21.49 3.33 -830.20 -2.76 -24.25 16 9 C 0.70 32.70 8.49 179.05 1.52 34.22 16 10 O -0.65 -36.95 16.60 -3.96 -0.07 -37.02 16 11 N -0.72 -33.80 5.51 -482.30 -2.66 -36.45 16 12 C 0.29 16.66 5.43 85.63 0.46 17.12 16 13 C -0.56 -31.33 9.28 25.60 0.24 -31.10 16 14 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 17 Si 0.99 42.83 29.54 68.60 2.03 44.85 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 C 0.12 3.46 6.12 86.78 0.53 3.99 16 22 H 0.10 1.48 7.84 -2.91 -0.02 1.46 16 23 H 0.10 1.46 8.06 -2.91 -0.02 1.44 16 24 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 25 H 0.07 0.94 7.62 -2.38 -0.02 0.92 16 26 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.09 1.04 8.04 -2.39 -0.02 1.02 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.40 15.85 7.31 -92.71 -0.68 15.17 16 32 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.05 1.59 8.04 -2.38 -0.02 1.57 16 36 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 Total: -1.00 -76.66 304.43 2.48 -74.18 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.37 Total: 16.54 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.29 Total: 19.28 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -5.13 Total: -117.83 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.07 Total: -37.02 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.66 2.48 -74.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.898 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds