Wall clock time and date at job start Sun Mar 29 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 H 1.09010 * 110.88592 * 305.69993 * 4 3 2 6 6 C 1.55149 * 111.00599 * 181.82247 * 4 3 2 7 7 C 1.54321 * 102.94481 * 206.42392 * 6 4 3 8 8 N 1.47027 * 107.27033 * 22.18564 * 7 6 4 9 9 C 1.34779 * 125.64906 * 181.09834 * 8 7 6 10 10 O 1.21584 * 120.00124 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99814 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99811 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47075 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99646 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00292 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99609 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47334 * 59.99958 * 17 15 13 19 19 H 1.48494 * 109.47282 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46875 * 299.99988 * 17 15 13 21 21 C 1.47466 * 108.72055 * 1.03052 * 8 7 6 22 22 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 26 26 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 27 27 H 1.08998 * 110.71779 * 324.78508 * 6 4 3 28 28 H 1.08996 * 110.72399 * 88.05794 * 6 4 3 29 29 H 1.08996 * 109.89089 * 141.60356 * 7 6 4 30 30 H 1.09007 * 109.88339 * 262.61864 * 7 6 4 31 31 H 0.97003 * 120.00064 * 0.02562 * 11 9 8 32 32 H 1.08994 * 109.47145 * 300.00447 * 12 11 9 33 33 H 1.09003 * 109.47177 * 60.00158 * 12 11 9 34 34 H 0.96996 * 120.00076 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.40292 * 217.07975 * 21 8 7 36 36 H 1.09008 * 110.34771 * 94.74432 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.5133 1.1369 2.1184 6 6 3.7981 2.6826 1.2423 7 6 5.1110 2.3053 1.9602 8 7 5.3058 0.8590 1.7822 9 6 6.3296 0.1371 2.2794 10 8 6.3892 -1.0588 2.0686 11 7 7.2874 0.7410 3.0104 12 6 8.4000 -0.0437 3.5514 13 6 9.3242 0.8616 4.3244 14 1 9.1045 1.9160 4.4050 15 6 10.4496 0.3436 4.9295 16 7 10.7168 -0.9403 4.8318 17 14 11.5947 1.4657 5.8882 18 1 10.8471 2.0996 7.0037 19 1 12.7225 0.6704 6.4365 20 1 12.1251 2.5193 4.9860 21 6 4.1947 0.3281 0.9708 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 2.6212 1.4028 -0.9313 26 1 1.3584 2.1317 0.0896 27 1 4.0011 3.0564 0.2387 28 1 3.2386 3.4164 1.8223 29 1 5.9454 2.8490 1.5172 30 1 5.0351 2.5436 3.0212 31 1 7.2397 1.6951 3.1790 32 1 8.0110 -0.8167 4.2141 33 1 8.9482 -0.5094 2.7324 34 1 11.5087 -1.3046 5.2572 35 1 3.9068 -0.6626 1.3225 36 1 4.4778 0.2907 -0.0812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540438.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:18 Heat of formation + Delta-G solvation = -21.662222 kcal Electronic energy + Delta-G solvation = -16593.529605 eV Core-core repulsion = 13884.680481 eV Total energy + Delta-G solvation = -2708.849124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77364 -37.66456 -34.96241 -34.10845 -32.35419 -31.33469 -29.26428 -27.39763 -25.68053 -23.29313 -22.11217 -20.66784 -19.82010 -19.17387 -17.91798 -16.54231 -15.95871 -15.20312 -15.14856 -14.54494 -14.28990 -13.85535 -13.82212 -13.22495 -12.93767 -12.66513 -12.31760 -12.09185 -11.92005 -11.77468 -11.61068 -11.03630 -10.94756 -10.84692 -10.79027 -10.67923 -10.27170 -9.52824 -9.36609 -9.35062 -8.69719 -8.32790 -7.68001 -6.12493 -4.19115 2.08888 3.23161 3.27616 3.32535 3.35136 3.95425 4.29304 4.35877 4.55306 4.70287 4.88767 4.97464 5.05700 5.22289 5.23320 5.26839 5.36110 5.59587 5.65706 5.70003 5.73966 5.76916 5.93391 6.03950 6.18233 6.43894 6.55310 6.60614 7.24508 7.55211 7.60680 7.62565 7.93224 8.06712 8.79319 8.95162 9.36694 9.51682 10.97815 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056065 B = 0.004228 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.304629 B = 6621.263135 C = 7005.397465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.082 4.082 4 C -0.099 4.099 5 H 0.085 0.915 6 C -0.124 4.124 7 C 0.101 3.899 8 N -0.646 5.646 9 C 0.710 3.290 10 O -0.599 6.599 11 N -0.727 5.727 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.133 3.867 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.386 0.614 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.281 8.324 -8.282 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.119 4.119 4 C -0.118 4.118 5 H 0.103 0.897 6 C -0.162 4.162 7 C -0.023 4.023 8 N -0.387 5.387 9 C 0.412 3.588 10 O -0.478 6.478 11 N -0.379 5.379 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.009 3.991 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.949 7.213 -8.310 20.208 hybrid contribution 0.671 0.990 0.660 1.366 sum -16.279 8.203 -7.650 19.769 Atomic orbital electron populations 1.23827 0.95953 1.01684 1.02148 1.23033 0.96035 0.98823 0.98947 1.20710 0.97656 0.95498 0.98044 1.22373 0.95024 0.95255 0.99181 0.89650 1.22665 0.95186 0.97116 1.01259 1.21900 0.97638 0.82369 1.00351 1.47635 1.25656 1.08010 1.57416 1.15703 0.79176 0.84688 0.79219 1.90868 1.78292 1.13175 1.65448 1.45727 1.25668 1.11963 1.54527 1.18984 0.81775 0.91111 0.93557 1.21188 1.08160 0.94828 1.33866 0.92045 1.24943 0.97588 0.95230 0.96241 1.69968 1.27062 1.11810 1.43476 0.86468 0.80039 0.80291 0.80046 1.20086 1.21073 1.20091 1.22011 0.84678 0.97616 0.94812 0.88760 0.88636 0.87092 0.90549 0.91086 0.90533 0.90197 0.91806 0.91823 0.78160 0.95751 0.95736 0.92408 0.90743 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 14.32 29.02 0.42 -1.14 16 2 C -0.15 -1.30 9.21 -36.02 -0.33 -1.63 16 3 C -0.08 -0.65 5.17 -27.88 -0.14 -0.79 16 4 C -0.10 -0.97 3.02 -88.48 -0.27 -1.24 16 5 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 6 C -0.12 -1.11 6.42 -24.90 -0.16 -1.27 16 7 C 0.10 1.25 6.15 -3.06 -0.02 1.23 16 8 N -0.65 -10.82 3.33 -176.20 -0.59 -11.41 16 9 C 0.71 15.88 8.49 -86.92 -0.74 15.14 16 10 O -0.60 -15.91 16.60 5.29 0.09 -15.82 16 11 N -0.73 -16.58 5.51 -66.41 -0.37 -16.94 16 12 C 0.27 7.40 5.43 -5.19 -0.03 7.37 16 13 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 C 0.13 1.82 5.97 -2.51 -0.01 1.80 16 22 H 0.09 0.64 7.84 -52.49 -0.41 0.23 16 23 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 24 H 0.11 1.01 7.97 -52.49 -0.42 0.59 16 25 H 0.08 0.58 8.03 -51.93 -0.42 0.17 16 26 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 27 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.39 7.66 7.31 -40.82 -0.30 7.36 16 32 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.06 0.79 7.96 -51.92 -0.41 0.38 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -33.34 304.29 -7.96 -41.30 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.69 Total: 2.27 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.70 Total: 5.75 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.22 Total: -54.20 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.34 -7.96 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540438.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds