Wall clock time and date at job start Sun Mar 29 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 H 1.09010 * 110.88592 * 305.69993 * 4 3 2 6 6 C 1.55149 * 111.00599 * 181.82247 * 4 3 2 7 7 C 1.54321 * 102.94481 * 206.42392 * 6 4 3 8 8 N 1.47027 * 107.27033 * 22.18564 * 7 6 4 9 9 C 1.34779 * 125.64906 * 181.09834 * 8 7 6 10 10 O 1.21584 * 120.00124 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99814 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99811 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47075 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00151 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99646 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00292 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99609 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47334 * 59.99958 * 17 15 13 19 19 H 1.48494 * 109.47282 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46875 * 299.99988 * 17 15 13 21 21 C 1.47466 * 108.72055 * 1.03052 * 8 7 6 22 22 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 26 26 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 27 27 H 1.08998 * 110.71779 * 324.78508 * 6 4 3 28 28 H 1.08996 * 110.72399 * 88.05794 * 6 4 3 29 29 H 1.08996 * 109.89089 * 141.60356 * 7 6 4 30 30 H 1.09007 * 109.88339 * 262.61864 * 7 6 4 31 31 H 0.97003 * 120.00064 * 0.02562 * 11 9 8 32 32 H 1.08994 * 109.47145 * 300.00447 * 12 11 9 33 33 H 1.09003 * 109.47177 * 60.00158 * 12 11 9 34 34 H 0.96996 * 120.00076 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.40292 * 217.07975 * 21 8 7 36 36 H 1.09008 * 110.34771 * 94.74432 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.5133 1.1369 2.1184 6 6 3.7981 2.6826 1.2423 7 6 5.1110 2.3053 1.9602 8 7 5.3058 0.8590 1.7822 9 6 6.3296 0.1371 2.2794 10 8 6.3892 -1.0588 2.0686 11 7 7.2874 0.7410 3.0104 12 6 8.4000 -0.0437 3.5514 13 6 9.3242 0.8616 4.3244 14 1 9.1045 1.9160 4.4050 15 6 10.4496 0.3436 4.9295 16 7 10.7168 -0.9403 4.8318 17 14 11.5947 1.4657 5.8882 18 1 10.8471 2.0996 7.0037 19 1 12.7225 0.6704 6.4365 20 1 12.1251 2.5193 4.9860 21 6 4.1947 0.3281 0.9708 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 2.6212 1.4028 -0.9313 26 1 1.3584 2.1317 0.0896 27 1 4.0011 3.0564 0.2387 28 1 3.2386 3.4164 1.8223 29 1 5.9454 2.8490 1.5172 30 1 5.0351 2.5436 3.0212 31 1 7.2397 1.6951 3.1790 32 1 8.0110 -0.8167 4.2141 33 1 8.9482 -0.5094 2.7324 34 1 11.5087 -1.3046 5.2572 35 1 3.9068 -0.6626 1.3225 36 1 4.4778 0.2907 -0.0812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540438.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:18 Heat of formation + Delta-G solvation = -44.391523 kcal Electronic energy + Delta-G solvation = -16594.515222 eV Core-core repulsion = 13884.680481 eV Total energy + Delta-G solvation = -2709.834740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23593 -39.01132 -36.16865 -35.85839 -34.36046 -32.50611 -30.22279 -29.31701 -26.86642 -24.79094 -23.79429 -21.52191 -21.09069 -20.32649 -19.49308 -18.04594 -17.59732 -16.94200 -16.49932 -16.26790 -15.40067 -15.14280 -14.73330 -14.54130 -14.21576 -14.17807 -13.92619 -13.67706 -13.16754 -12.92060 -12.87427 -12.67432 -12.47186 -12.23641 -11.81563 -11.59187 -11.52080 -11.42952 -11.25698 -10.80509 -10.15528 -10.07585 -9.40356 -8.29137 -6.46572 1.42634 1.45335 1.48059 1.56010 1.75736 2.17011 2.38666 3.05412 3.23253 3.58184 3.68147 3.94083 4.25051 4.29148 4.32267 4.45561 4.59359 4.68472 4.85446 4.89862 4.97964 4.99991 5.06852 5.11091 5.22632 5.24155 5.35094 5.42223 5.48116 5.70879 5.82730 5.83224 5.95127 6.21276 6.64529 7.15554 7.23623 7.66302 8.83297 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056065 B = 0.004228 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.304629 B = 6621.263135 C = 7005.397465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C -0.073 4.073 4 C -0.085 4.085 5 H 0.082 0.918 6 C -0.110 4.110 7 C 0.088 3.912 8 N -0.641 5.641 9 C 0.703 3.297 10 O -0.652 6.652 11 N -0.720 5.720 12 C 0.286 3.714 13 C -0.557 4.557 14 H 0.083 0.917 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.261 1.261 21 C 0.123 3.877 22 H 0.110 0.890 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.403 0.597 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.270 0.730 35 H 0.050 0.950 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.425 11.769 -8.271 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.189 4.189 3 C -0.110 4.110 4 C -0.104 4.104 5 H 0.101 0.899 6 C -0.147 4.147 7 C -0.034 4.034 8 N -0.380 5.380 9 C 0.405 3.595 10 O -0.535 6.535 11 N -0.374 5.374 12 C 0.163 3.837 13 C -0.595 4.595 14 H 0.101 0.899 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.185 1.185 21 C 0.000 4.000 22 H 0.128 0.872 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.166 10.733 -8.328 22.684 hybrid contribution 0.923 -0.140 0.593 1.106 sum -17.243 10.593 -7.735 21.665 Atomic orbital electron populations 1.24005 0.95700 1.02598 1.00574 1.23076 0.96538 0.98849 1.00435 1.20679 0.97440 0.95726 0.97192 1.22300 0.93744 0.94334 1.00068 0.89946 1.22695 0.92885 0.96827 1.02335 1.22302 1.00219 0.79260 1.01601 1.47653 1.24246 1.10056 1.56008 1.15909 0.80096 0.84355 0.79166 1.90819 1.79708 1.15777 1.67206 1.45313 1.24925 1.12355 1.54815 1.18423 0.82774 0.90978 0.91552 1.21550 1.08352 0.95710 1.33884 0.89861 1.26106 0.99472 0.96878 0.97132 1.70141 1.27913 1.14331 1.44587 0.85151 0.77210 0.77923 0.78570 1.18543 1.20978 1.18546 1.22297 0.85309 0.97965 0.94412 0.87167 0.88464 0.88639 0.89972 0.88739 0.88717 0.87224 0.90990 0.91190 0.76186 0.99801 0.99752 0.92148 0.93137 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 67.79 0.97 -1.64 16 2 C -0.17 -2.71 9.21 25.65 0.24 -2.48 16 3 C -0.07 -0.95 5.17 29.85 0.15 -0.79 16 4 C -0.09 -1.47 3.02 -9.41 -0.03 -1.50 16 5 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 6 C -0.11 -1.53 6.42 31.78 0.20 -1.32 16 7 C 0.09 1.98 6.15 86.73 0.53 2.51 16 8 N -0.64 -21.40 3.33 -829.63 -2.76 -24.16 16 9 C 0.70 32.61 8.49 179.05 1.52 34.13 16 10 O -0.65 -36.77 16.60 -3.98 -0.07 -36.84 16 11 N -0.72 -33.78 5.51 -482.30 -2.66 -36.43 16 12 C 0.29 16.66 5.43 85.63 0.46 17.12 16 13 C -0.56 -31.34 9.28 25.60 0.24 -31.11 16 14 H 0.08 4.22 7.60 -2.91 -0.02 4.19 16 15 C 0.00 0.21 5.46 84.66 0.46 0.67 16 16 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 17 Si 0.99 42.85 29.54 68.60 2.03 44.87 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 C 0.12 3.36 5.97 86.85 0.52 3.88 16 22 H 0.11 1.15 7.84 -2.91 -0.02 1.12 16 23 H 0.10 1.26 8.06 -2.91 -0.02 1.23 16 24 H 0.10 1.77 7.97 -2.91 -0.02 1.75 16 25 H 0.08 1.00 8.03 -2.39 -0.02 0.98 16 26 H 0.09 0.86 7.79 -2.39 -0.02 0.84 16 27 H 0.09 1.05 8.04 -2.39 -0.02 1.03 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.40 15.84 7.31 -92.71 -0.68 15.17 16 32 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 36 H 0.07 1.72 7.96 -2.38 -0.02 1.70 16 Total: -1.00 -76.39 304.29 2.47 -73.92 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.37 Total: 16.33 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.27 Total: 19.46 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -5.13 Total: -117.74 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.07 Total: -36.84 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -76.39 2.47 -73.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540438.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.525 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds