Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34089 * 126.35507 * 2 1 4 4 N 1.34726 * 107.79083 * 179.78017 * 3 2 1 5 5 C 1.31055 * 108.60457 * 0.42086 * 4 3 2 6 6 N 1.38160 * 125.71413 * 179.84322 * 5 4 3 7 7 C 1.46496 * 119.99777 * 359.68887 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46626 * 299.99666 * 8 7 6 10 10 C 1.52997 * 109.47164 * 59.99963 * 8 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 8 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99907 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99654 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47022 * 89.99986 * 16 14 12 18 18 H 1.48502 * 109.46769 * 209.99494 * 16 14 12 19 19 H 1.48495 * 109.47280 * 329.99669 * 16 14 12 20 20 O 1.34214 * 108.57494 * 359.57706 * 5 4 3 21 21 H 1.09005 * 109.46449 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47253 * 299.98483 * 1 2 3 23 23 H 1.09002 * 109.47282 * 59.98951 * 1 2 3 24 24 H 1.08000 * 126.10690 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00031 * 179.69401 * 6 5 4 26 26 H 1.09001 * 109.47464 * 60.00679 * 7 6 5 27 27 H 1.09001 * 109.47459 * 300.00395 * 7 6 5 28 28 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 29 29 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 30 30 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 31 31 H 1.09001 * 109.47375 * 59.99966 * 10 8 7 32 32 H 1.09002 * 109.46777 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 34 34 H 1.09001 * 109.47289 * 299.99953 * 11 8 7 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 8 7 36 36 H 0.96999 * 119.99682 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3019 1.0799 0.0000 4 7 3.5791 0.6510 0.0049 5 6 3.5800 -0.6596 -0.0012 6 7 4.7024 -1.4652 -0.0020 7 6 6.0372 -0.8617 -0.0024 8 6 7.0962 -1.9660 -0.0039 9 6 6.9294 -2.8341 1.2449 10 6 6.9278 -2.8325 -1.2536 11 6 8.4903 -1.3357 -0.0037 12 6 9.5334 -2.4234 -0.0045 13 1 9.2321 -3.4606 -0.0055 14 6 10.8724 -2.0946 -0.0051 15 7 11.7827 -3.0438 -0.0063 16 14 11.3935 -0.3007 -0.0041 17 1 11.5324 0.1736 1.3962 18 1 12.6957 -0.1632 -0.7047 19 1 10.3670 0.5134 -0.7030 20 8 2.3081 -1.0880 -0.0007 21 1 -0.3632 -1.0278 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.9765 2.1097 0.0004 25 1 4.6065 -2.4305 -0.0023 26 1 6.1571 -0.2441 0.8877 27 1 6.1562 -0.2435 -0.8923 28 1 5.9362 -3.2831 1.2453 29 1 7.6841 -3.6205 1.2441 30 1 7.0494 -2.2169 2.1352 31 1 7.0466 -2.2140 -2.1433 32 1 7.6820 -3.6195 -1.2543 33 1 5.9346 -3.2815 -1.2532 34 1 8.6095 -0.7170 -0.8931 35 1 8.6100 -0.7187 0.8868 36 1 12.7246 -2.8124 -0.0063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884508510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = 14.127758 kcal Electronic energy + Delta-G solvation = -16863.989591 eV Core-core repulsion = 14156.692437 eV Total energy + Delta-G solvation = -2707.297154 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.96673 -38.04523 -34.76050 -34.21283 -32.36131 -31.51512 -27.91667 -26.62252 -26.57585 -25.49698 -22.77463 -21.64988 -21.02562 -18.54717 -17.60731 -16.84846 -16.70051 -15.38554 -15.05536 -14.33745 -14.13317 -13.92057 -13.48039 -13.31259 -13.27268 -12.75279 -12.66805 -12.36214 -12.27159 -11.44776 -11.19617 -11.05373 -11.01404 -10.63926 -10.54651 -10.14093 -10.08731 -9.79098 -9.71068 -9.58525 -9.01715 -8.54395 -7.53722 -6.05041 -4.02608 1.76300 2.21387 3.02509 3.31403 3.39499 3.43270 3.73144 4.45032 4.86529 4.97428 5.15795 5.27289 5.28123 5.28481 5.37797 5.49323 5.61396 5.66911 6.08524 6.08674 6.12631 6.18679 6.29699 6.29824 6.55661 6.57858 6.83699 6.99932 7.02450 7.10315 7.17449 7.34071 7.37703 7.77088 8.22403 8.51675 8.98866 9.57345 11.07657 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049545 B = 0.004834 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.012503 B = 5790.884895 C = 6154.227429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.105 4.105 3 C -0.005 4.005 4 N -0.544 5.544 5 C 0.462 3.538 6 N -0.678 5.678 7 C 0.152 3.848 8 C -0.063 4.063 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.001 4.001 12 C -0.512 4.512 13 H 0.078 0.922 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 O -0.231 6.231 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.177 0.823 25 H 0.413 0.587 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.319 4.691 -0.030 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.159 4.159 3 C -0.143 4.143 4 N -0.284 5.284 5 C 0.163 3.837 6 N -0.327 5.327 7 C 0.030 3.970 8 C -0.063 4.063 9 C -0.187 4.187 10 C -0.187 4.187 11 C -0.038 4.038 12 C -0.550 4.550 13 H 0.096 0.904 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 O -0.120 6.120 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.194 0.806 25 H 0.251 0.749 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.487 5.114 -0.027 19.181 hybrid contribution -0.193 0.153 0.021 0.247 sum -18.680 5.266 -0.006 19.408 Atomic orbital electron populations 1.20072 0.84578 1.03501 1.03007 1.22789 0.94087 0.83838 1.15177 1.22786 0.87736 0.99783 1.03970 1.70902 1.22221 1.05969 1.29286 1.21754 0.79755 0.86963 0.95212 1.43726 1.00366 1.07391 1.81210 1.21698 0.77170 0.96080 1.02008 1.20735 0.95346 0.94286 0.95949 1.21792 0.99772 1.00405 0.96774 1.21786 0.99771 1.00393 0.96762 1.19587 0.90763 0.96830 0.96669 1.21066 0.89482 0.93869 1.50554 0.90370 1.24997 0.96764 0.96959 0.94687 1.69901 1.00854 1.32252 1.51244 0.86856 0.78106 0.86273 0.78534 1.20343 1.21497 1.18933 1.84335 1.16428 1.36865 1.74411 0.91068 0.90156 0.90154 0.80561 0.74896 0.91644 0.91651 0.94997 0.90735 0.93259 0.93250 0.90740 0.94994 0.96221 0.96667 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.43 36.01 0.38 -0.04 16 2 C -0.11 -1.31 7.38 -35.77 -0.26 -1.57 16 3 C 0.00 -0.06 11.79 -17.74 -0.21 -0.27 16 4 N -0.54 -9.06 10.94 -14.45 -0.16 -9.21 16 5 C 0.46 7.39 9.05 -86.99 -0.79 6.60 16 6 N -0.68 -10.20 5.10 -62.29 -0.32 -10.51 16 7 C 0.15 2.52 4.87 -4.04 -0.02 2.50 16 8 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 9 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 10 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 11 C 0.00 -0.01 3.11 -27.89 -0.09 -0.10 16 12 C -0.51 -13.58 8.20 -34.44 -0.28 -13.87 16 13 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 14 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 15 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 16 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 20 O -0.23 -3.44 10.80 3.68 0.04 -3.40 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.41 5.54 6.29 -40.82 -0.26 5.29 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 29 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 33 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 35 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 293.25 15.07 4.42 4.42 Total: -1.00 -30.71 293.25 -6.05 -36.76 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.28 Total: 1.70 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.86 Total: -10.08 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.30 Total: -46.05 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.71 -6.05 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884508510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.890 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds