Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34089 * 126.35507 * 2 1 4 4 N 1.34726 * 107.79083 * 179.78017 * 3 2 1 5 5 C 1.31055 * 108.60457 * 0.42086 * 4 3 2 6 6 N 1.38160 * 125.71413 * 179.84322 * 5 4 3 7 7 C 1.46496 * 119.99777 * 359.68887 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46626 * 299.99666 * 8 7 6 10 10 C 1.52997 * 109.47164 * 59.99963 * 8 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 8 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99907 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99654 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47022 * 89.99986 * 16 14 12 18 18 H 1.48502 * 109.46769 * 209.99494 * 16 14 12 19 19 H 1.48495 * 109.47280 * 329.99669 * 16 14 12 20 20 O 1.34214 * 108.57494 * 359.57706 * 5 4 3 21 21 H 1.09005 * 109.46449 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47253 * 299.98483 * 1 2 3 23 23 H 1.09002 * 109.47282 * 59.98951 * 1 2 3 24 24 H 1.08000 * 126.10690 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00031 * 179.69401 * 6 5 4 26 26 H 1.09001 * 109.47464 * 60.00679 * 7 6 5 27 27 H 1.09001 * 109.47459 * 300.00395 * 7 6 5 28 28 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 29 29 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 30 30 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 31 31 H 1.09001 * 109.47375 * 59.99966 * 10 8 7 32 32 H 1.09002 * 109.46777 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 34 34 H 1.09001 * 109.47289 * 299.99953 * 11 8 7 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 8 7 36 36 H 0.96999 * 119.99682 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3019 1.0799 0.0000 4 7 3.5791 0.6510 0.0049 5 6 3.5800 -0.6596 -0.0012 6 7 4.7024 -1.4652 -0.0020 7 6 6.0372 -0.8617 -0.0024 8 6 7.0962 -1.9660 -0.0039 9 6 6.9294 -2.8341 1.2449 10 6 6.9278 -2.8325 -1.2536 11 6 8.4903 -1.3357 -0.0037 12 6 9.5334 -2.4234 -0.0045 13 1 9.2321 -3.4606 -0.0055 14 6 10.8724 -2.0946 -0.0051 15 7 11.7827 -3.0438 -0.0063 16 14 11.3935 -0.3007 -0.0041 17 1 11.5324 0.1736 1.3962 18 1 12.6957 -0.1632 -0.7047 19 1 10.3670 0.5134 -0.7030 20 8 2.3081 -1.0880 -0.0007 21 1 -0.3632 -1.0278 -0.0005 22 1 -0.3634 0.5136 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.9765 2.1097 0.0004 25 1 4.6065 -2.4305 -0.0023 26 1 6.1571 -0.2441 0.8877 27 1 6.1562 -0.2435 -0.8923 28 1 5.9362 -3.2831 1.2453 29 1 7.6841 -3.6205 1.2441 30 1 7.0494 -2.2169 2.1352 31 1 7.0466 -2.2140 -2.1433 32 1 7.6820 -3.6195 -1.2543 33 1 5.9346 -3.2815 -1.2532 34 1 8.6095 -0.7170 -0.8931 35 1 8.6100 -0.7187 0.8868 36 1 12.7246 -2.8124 -0.0063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884508510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = -7.216596 kcal Electronic energy + Delta-G solvation = -16864.915151 eV Core-core repulsion = 14156.692437 eV Total energy + Delta-G solvation = -2708.222715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.03532 -39.48067 -36.10187 -35.36621 -34.26158 -32.48979 -29.75338 -28.01338 -27.85328 -26.58171 -24.48370 -22.84907 -22.16270 -19.89708 -18.98141 -18.84208 -17.78946 -16.59663 -16.32060 -15.92006 -15.72466 -15.26160 -14.87347 -14.36331 -14.23029 -14.19681 -14.03491 -13.74389 -13.10073 -13.02505 -12.82927 -12.72210 -12.31759 -12.26951 -12.18113 -11.76153 -11.56498 -11.26421 -11.23035 -10.92172 -10.91399 -10.69334 -8.60970 -8.21271 -6.21803 0.74274 1.10879 1.38218 1.40793 1.50918 1.93282 2.40721 2.72521 3.14355 3.84468 3.92056 4.03740 4.14406 4.15378 4.32101 4.50279 4.62283 4.69775 4.76765 4.80112 4.92953 4.98746 5.07797 5.08367 5.29078 5.29464 5.36226 5.39893 5.40618 5.53760 5.67078 5.75364 5.95752 6.25281 6.38978 6.85226 7.13475 7.40981 8.94415 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049545 B = 0.004834 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.012503 B = 5790.884895 C = 6154.227429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.096 4.096 3 C -0.029 4.029 4 N -0.572 5.572 5 C 0.443 3.557 6 N -0.675 5.675 7 C 0.170 3.830 8 C -0.057 4.057 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.001 4.001 12 C -0.503 4.503 13 H 0.051 0.949 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.290 1.290 19 H -0.249 1.249 20 O -0.239 6.239 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.204 0.796 25 H 0.420 0.580 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.970 6.205 -0.019 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.149 4.149 3 C -0.165 4.165 4 N -0.313 5.313 5 C 0.144 3.856 6 N -0.324 5.324 7 C 0.047 3.953 8 C -0.058 4.058 9 C -0.182 4.182 10 C -0.182 4.182 11 C -0.039 4.039 12 C -0.542 4.542 13 H 0.069 0.931 14 C -0.191 4.191 15 N -0.594 5.594 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.216 1.216 19 H -0.172 1.172 20 O -0.128 6.128 21 H 0.095 0.905 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.221 0.779 25 H 0.259 0.741 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.185 6.631 -0.016 22.199 hybrid contribution 0.489 -0.354 0.019 0.603 sum -20.697 6.278 0.003 21.628 Atomic orbital electron populations 1.20337 0.81048 1.04565 1.05078 1.23769 0.95843 0.82935 1.12387 1.23288 0.86803 1.01482 1.04970 1.70847 1.24307 1.06528 1.29622 1.21783 0.80257 0.87014 0.96514 1.43419 0.99693 1.07574 1.81762 1.21298 0.77524 0.94946 1.01506 1.20578 0.93633 0.94814 0.96750 1.21714 1.00706 0.99499 0.96307 1.21710 1.00712 0.99490 0.96293 1.19546 0.92213 0.95655 0.96508 1.21365 0.90434 0.93937 1.48419 0.93113 1.25849 0.97096 1.01174 0.94988 1.70046 1.01188 1.34530 1.53641 0.85877 0.77878 0.81330 0.78891 1.19654 1.21590 1.17230 1.84352 1.16222 1.37899 1.74317 0.90496 0.87997 0.87989 0.77877 0.74065 0.92165 0.92230 0.91860 0.93453 0.93337 0.93358 0.93447 0.91853 0.96304 0.96458 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.43 71.24 0.74 0.14 16 2 C -0.10 -2.13 7.38 24.74 0.18 -1.95 16 3 C -0.03 -0.70 11.79 83.30 0.98 0.28 16 4 N -0.57 -18.16 10.94 -313.89 -3.43 -21.59 16 5 C 0.44 13.44 9.05 179.08 1.62 15.06 16 6 N -0.67 -19.07 5.10 -461.46 -2.35 -21.42 16 7 C 0.17 5.39 4.87 86.38 0.42 5.81 16 8 C -0.06 -2.03 0.54 -52.18 -0.03 -2.06 16 9 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 10 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 11 C 0.00 -0.06 3.11 29.85 0.09 0.03 16 12 C -0.50 -27.23 8.20 25.60 0.21 -27.02 16 13 H 0.05 2.97 5.92 -2.91 -0.02 2.95 16 14 C 0.01 0.29 5.47 84.66 0.46 0.75 16 15 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 16 Si 0.94 44.01 27.47 68.60 1.88 45.89 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 20 O -0.24 -6.60 10.80 -9.76 -0.11 -6.70 16 21 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.20 3.50 8.06 -2.91 -0.02 3.48 16 25 H 0.42 10.32 6.29 -92.71 -0.58 9.74 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 29 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 33 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 35 H 0.02 0.76 7.57 -2.38 -0.02 0.74 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.16 293.25 2.58 -64.59 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.44 Total: 13.94 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.85 Total: -16.26 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -5.49 Total: -101.46 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.11 Total: -6.70 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -67.16 2.58 -64.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884508510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.372 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds