Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48505 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99284 * 3 2 1 6 6 H 1.48495 * 109.47652 * 59.99624 * 3 2 1 7 7 C 1.37873 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47620 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99925 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00224 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99562 * 180.02562 * 13 12 11 16 16 C 1.48151 * 127.83369 * 180.02562 * 15 13 12 17 17 C 1.54393 * 104.71948 * 140.35385 * 16 15 13 18 18 H 1.08996 * 117.61382 * 244.83965 * 17 16 15 19 19 C 1.53138 * 118.03077 * 87.03719 * 17 16 15 20 20 C 1.52996 * 60.65947 * 268.64362 * 19 17 16 21 21 H 1.09002 * 120.26599 * 248.56350 * 20 19 17 22 22 C 1.48141 * 127.84231 * 359.97438 * 15 13 12 23 23 H 0.96999 * 119.99829 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47450 * 59.99957 * 9 7 2 25 25 H 1.09005 * 109.47389 * 299.99822 * 9 7 2 26 26 H 1.09007 * 109.46724 * 59.99994 * 10 9 7 27 27 H 1.08998 * 109.47151 * 300.00535 * 10 9 7 28 28 H 1.09005 * 109.46742 * 59.99785 * 11 10 9 29 29 H 1.09003 * 109.46918 * 300.00698 * 11 10 9 30 30 H 0.97000 * 119.99928 * 0.02562 * 12 11 10 31 31 H 1.09002 * 110.40666 * 259.19717 * 16 15 13 32 32 H 1.09002 * 110.40751 * 21.51159 * 16 15 13 33 33 H 1.09002 * 117.38588 * 160.93350 * 19 17 16 34 34 H 1.09006 * 117.44795 * 16.32982 * 19 17 16 35 35 H 1.09001 * 110.41010 * 338.37809 * 22 15 13 36 36 H 1.09004 * 110.40547 * 100.80247 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 0.0015 14 8 0.7874 -7.5934 0.0024 15 7 2.8587 -8.3957 0.0014 16 6 2.5599 -9.8467 0.0019 17 6 3.6067 -10.4631 -0.9511 18 1 3.2439 -10.9252 -1.8692 19 6 4.9655 -10.8604 -0.3674 20 6 4.7814 -9.4582 -0.9510 21 1 5.2939 -9.1739 -1.8700 22 6 4.3385 -8.3262 -0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8532 -5.0450 -0.8886 29 1 0.8537 -5.0445 0.8914 30 1 3.3858 -5.9234 0.0002 31 1 2.6711 -10.2574 1.0054 32 1 1.5522 -10.0274 -0.3724 33 1 5.5690 -11.5666 -0.9377 34 1 5.0407 -10.9476 0.7165 35 1 4.6733 -7.3600 -0.3776 36 1 4.7281 -8.4988 1.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888160228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = -4.540161 kcal Electronic energy + Delta-G solvation = -16365.884614 eV Core-core repulsion = 13657.777958 eV Total energy + Delta-G solvation = -2708.106656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53163 -38.60514 -35.35312 -33.76170 -33.14001 -31.07846 -28.75450 -27.12483 -25.57572 -22.94299 -21.75706 -20.64154 -20.42421 -19.70071 -18.03138 -16.40755 -16.14133 -15.80264 -15.57996 -14.68633 -14.47644 -13.92305 -13.85218 -13.69394 -12.87513 -12.52173 -12.27705 -12.00015 -11.78688 -11.76736 -11.68388 -10.91471 -10.72089 -10.58027 -10.54145 -10.45278 -9.95883 -9.85177 -9.43003 -9.10117 -8.99571 -8.51404 -8.36559 -6.00971 -4.03998 2.62308 3.15971 3.30500 3.31990 3.37929 3.41449 4.09731 4.20928 4.29184 4.45178 4.57172 4.77729 4.85876 5.16119 5.29991 5.34851 5.36051 5.55547 5.61420 5.69400 5.75221 5.81607 5.83698 6.02174 6.20043 6.54747 6.63652 6.85355 7.03283 7.14757 7.65256 7.77949 7.98148 8.10102 8.39076 8.74584 9.02948 9.60150 11.10389 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.003711 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.504373 B = 7542.423855 C = 7957.410982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.739 5.739 13 C 0.724 3.276 14 O -0.590 6.590 15 N -0.646 5.646 16 C 0.150 3.850 17 C -0.178 4.178 18 H 0.121 0.879 19 C -0.136 4.136 20 C -0.179 4.179 21 H 0.121 0.879 22 C 0.128 3.872 23 H 0.260 0.740 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.393 0.607 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -20.388 -0.658 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.394 5.394 13 C 0.426 3.574 14 O -0.468 6.468 15 N -0.385 5.385 16 C 0.027 3.973 17 C -0.198 4.198 18 H 0.139 0.861 19 C -0.173 4.173 20 C -0.198 4.198 21 H 0.139 0.861 22 C 0.005 3.995 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.227 0.773 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.163 -20.267 -0.648 22.681 hybrid contribution 0.966 1.064 -0.138 1.443 sum 11.128 -19.203 -0.786 22.209 Atomic orbital electron populations 1.69979 1.06055 1.26565 1.50664 1.25035 0.94860 0.99313 0.95309 0.86524 0.80034 0.83762 0.77591 1.19766 1.21007 1.21008 1.21241 0.93025 0.90934 1.50778 0.92598 1.19035 0.93855 0.90787 0.97725 1.21892 0.99800 0.93301 1.00810 1.21538 0.91296 0.84074 1.01948 1.45400 1.10508 1.04207 1.79245 1.15434 0.84128 0.80037 0.77767 1.90923 1.13587 1.83712 1.58552 1.48388 1.05576 1.05547 1.79019 1.21540 0.98849 0.78727 0.98208 1.23802 0.89581 1.03902 1.02478 0.86096 1.23058 0.97192 0.95840 1.01206 1.23695 1.03599 0.90176 1.02328 0.86103 1.21750 0.80604 0.98381 0.98748 0.92982 0.96220 0.96205 0.92773 0.92787 0.91917 0.91875 0.77332 0.91224 0.89389 0.87808 0.88527 0.90098 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.13 2.49 5.67 -4.04 -0.02 2.47 16 12 N -0.74 -11.63 5.53 -65.23 -0.36 -11.99 16 13 C 0.72 12.19 8.57 -86.92 -0.74 11.44 16 14 O -0.59 -12.38 16.61 5.29 0.09 -12.30 16 15 N -0.65 -8.20 3.32 -175.05 -0.58 -8.78 16 16 C 0.15 1.58 6.84 -2.40 -0.02 1.56 16 17 C -0.18 -1.41 7.16 -88.98 -0.64 -2.05 16 18 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 19 C -0.14 -0.80 10.06 -26.66 -0.27 -1.07 16 20 C -0.18 -1.34 7.13 -89.09 -0.64 -1.98 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.13 1.15 6.71 -2.44 -0.02 1.13 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.39 5.07 6.87 -40.82 -0.28 4.79 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.67 6.87 -51.93 -0.36 0.31 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 301.95 15.07 4.55 4.55 Total: -1.00 -33.39 301.95 -9.28 -42.67 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.66 Total: -0.43 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.03 Total: -4.03 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.21 Total: -47.02 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.39 -9.28 -42.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888160228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.132 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds