Wall clock time and date at job start Sun Mar 29 2020 21:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99905 * 2 1 4 4 H 1.48505 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99284 * 3 2 1 6 6 H 1.48495 * 109.47652 * 59.99624 * 3 2 1 7 7 C 1.37873 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47620 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99925 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00224 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99562 * 180.02562 * 13 12 11 16 16 C 1.48151 * 127.83369 * 180.02562 * 15 13 12 17 17 C 1.54393 * 104.71948 * 140.35385 * 16 15 13 18 18 H 1.08996 * 117.61382 * 244.83965 * 17 16 15 19 19 C 1.53138 * 118.03077 * 87.03719 * 17 16 15 20 20 C 1.52996 * 60.65947 * 268.64362 * 19 17 16 21 21 H 1.09002 * 120.26599 * 248.56350 * 20 19 17 22 22 C 1.48141 * 127.84231 * 359.97438 * 15 13 12 23 23 H 0.96999 * 119.99829 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47450 * 59.99957 * 9 7 2 25 25 H 1.09005 * 109.47389 * 299.99822 * 9 7 2 26 26 H 1.09007 * 109.46724 * 59.99994 * 10 9 7 27 27 H 1.08998 * 109.47151 * 300.00535 * 10 9 7 28 28 H 1.09005 * 109.46742 * 59.99785 * 11 10 9 29 29 H 1.09003 * 109.46918 * 300.00698 * 11 10 9 30 30 H 0.97000 * 119.99928 * 0.02562 * 12 11 10 31 31 H 1.09002 * 110.40666 * 259.19717 * 16 15 13 32 32 H 1.09002 * 110.40751 * 21.51159 * 16 15 13 33 33 H 1.09002 * 117.38588 * 160.93350 * 19 17 16 34 34 H 1.09006 * 117.44795 * 16.32982 * 19 17 16 35 35 H 1.09001 * 110.41010 * 338.37809 * 22 15 13 36 36 H 1.09004 * 110.40547 * 100.80247 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0006 13 6 1.9828 -7.3713 0.0015 14 8 0.7874 -7.5934 0.0024 15 7 2.8587 -8.3957 0.0014 16 6 2.5599 -9.8467 0.0019 17 6 3.6067 -10.4631 -0.9511 18 1 3.2439 -10.9252 -1.8692 19 6 4.9655 -10.8604 -0.3674 20 6 4.7814 -9.4582 -0.9510 21 1 5.2939 -9.1739 -1.8700 22 6 4.3385 -8.3262 -0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8532 -5.0450 -0.8886 29 1 0.8537 -5.0445 0.8914 30 1 3.3858 -5.9234 0.0002 31 1 2.6711 -10.2574 1.0054 32 1 1.5522 -10.0274 -0.3724 33 1 5.5690 -11.5666 -0.9377 34 1 5.0407 -10.9476 0.7165 35 1 4.6733 -7.3600 -0.3776 36 1 4.7281 -8.4988 1.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888160228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:26 Heat of formation + Delta-G solvation = -26.307846 kcal Electronic energy + Delta-G solvation = -16366.828531 eV Core-core repulsion = 13657.777958 eV Total energy + Delta-G solvation = -2709.050573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52139 -39.66565 -36.97702 -35.25739 -34.56684 -32.84917 -29.59127 -28.70759 -26.83135 -24.69874 -22.45730 -22.30738 -21.13925 -20.94211 -19.16831 -18.47671 -17.19513 -17.05189 -16.57797 -16.44139 -15.97855 -15.30933 -14.86968 -14.77879 -14.28394 -13.78158 -13.70202 -13.42466 -13.29249 -12.77746 -12.62251 -12.52143 -12.46262 -12.33589 -11.71527 -11.69451 -11.39945 -11.17976 -11.09253 -10.80238 -10.56118 -10.32360 -9.62626 -8.19378 -6.31026 1.42032 1.42484 1.49544 1.56035 2.03403 2.42125 2.57850 3.00850 3.14474 3.56060 3.66206 3.94432 4.11807 4.14432 4.20397 4.27273 4.47407 4.53508 4.63920 4.75035 4.89618 4.93429 4.93587 5.05592 5.10924 5.15498 5.17670 5.29114 5.43205 5.52674 5.70070 5.83982 6.00869 6.22308 6.85921 6.92020 7.38614 7.47398 8.93100 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.003711 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.504373 B = 7542.423855 C = 7957.410982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.149 3.851 12 N -0.728 5.728 13 C 0.717 3.283 14 O -0.641 6.641 15 N -0.645 5.645 16 C 0.142 3.858 17 C -0.188 4.188 18 H 0.125 0.875 19 C -0.110 4.110 20 C -0.180 4.180 21 H 0.131 0.869 22 C 0.121 3.879 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.409 0.591 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.533 -20.999 -0.658 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.384 5.384 13 C 0.420 3.580 14 O -0.523 6.523 15 N -0.383 5.383 16 C 0.020 3.980 17 C -0.207 4.207 18 H 0.143 0.857 19 C -0.147 4.147 20 C -0.199 4.199 21 H 0.149 0.851 22 C -0.001 4.001 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.246 0.754 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.435 -20.921 -0.649 24.872 hybrid contribution -0.030 1.170 -0.132 1.177 sum 13.405 -19.752 -0.780 23.884 Atomic orbital electron populations 1.70126 1.07988 1.27749 1.51750 1.26045 0.95760 1.03632 0.94776 0.85339 0.79211 0.78510 0.77603 1.18101 1.20590 1.20590 1.21703 0.93784 0.91925 1.50365 0.91436 1.18946 0.94431 0.92917 0.95128 1.21587 0.98457 0.91524 1.02145 1.21118 0.91339 0.84581 1.00500 1.45045 1.10821 1.03349 1.79160 1.15606 0.83989 0.80785 0.77668 1.90882 1.16076 1.84553 1.60817 1.48475 1.07017 1.05468 1.77346 1.21720 0.98825 0.77792 0.99702 1.23735 0.89556 1.04996 1.02461 0.85710 1.23178 0.94880 0.94663 1.01992 1.23759 1.03337 0.90225 1.02618 0.85116 1.22047 0.77968 0.99714 1.00353 0.92809 0.98941 0.98902 0.91287 0.91340 0.93551 0.93431 0.75389 0.89852 0.91656 0.85716 0.87640 0.89283 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 11 C 0.15 5.62 5.67 86.38 0.49 6.11 16 12 N -0.73 -22.49 5.53 -478.54 -2.65 -25.14 16 13 C 0.72 24.26 8.57 179.06 1.53 25.79 16 14 O -0.64 -27.92 16.61 -4.00 -0.07 -27.99 16 15 N -0.65 -15.77 3.32 -825.99 -2.74 -18.51 16 16 C 0.14 2.88 6.84 86.54 0.59 3.47 16 17 C -0.19 -2.58 7.16 -9.73 -0.07 -2.65 16 18 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.11 -0.89 10.06 30.64 0.31 -0.58 16 20 C -0.18 -2.15 7.13 -9.80 -0.07 -2.22 16 21 H 0.13 1.34 8.14 -2.39 -0.02 1.33 16 22 C 0.12 1.85 6.71 86.52 0.58 2.43 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 26 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 9.81 6.87 -92.71 -0.64 9.17 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.60 7.88 -2.39 -0.02 1.59 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.09 1.22 6.87 -2.39 -0.02 1.20 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.79 301.95 1.65 -72.14 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.42 Total: 10.79 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.37 Total: 0.09 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -5.10 Total: -101.01 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.07 Total: -27.99 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.79 1.65 -72.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888160228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.831 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds