Wall clock time and date at job start Sun Mar 29 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34479 * 126.16509 * 2 1 4 4 C 1.30251 * 108.69732 * 180.02562 * 3 2 1 5 5 O 1.33961 * 108.76550 * 0.02562 * 4 3 2 6 6 C 1.34331 * 126.16517 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.44330 * 359.97083 * 6 2 1 8 8 N 1.46900 * 109.47108 * 71.51985 * 7 6 2 9 9 C 1.46903 * 111.00199 * 201.92940 * 8 7 6 10 10 C 1.50702 * 109.47355 * 164.30308 * 9 8 7 11 11 H 1.08006 * 119.99528 * 4.69223 * 10 9 8 12 12 C 1.37876 * 120.00014 * 184.69817 * 10 9 8 13 13 N 1.31507 * 119.99848 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99858 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47498 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47349 * 120.00032 * 14 12 10 17 17 H 1.48499 * 109.47031 * 239.99842 * 14 12 10 18 18 C 1.46900 * 111.00314 * 77.97094 * 8 7 6 19 19 C 1.53006 * 109.46981 * 286.94540 * 18 8 7 20 20 C 1.53002 * 109.46944 * 46.93957 * 18 8 7 21 21 H 1.08993 * 109.47161 * 90.02252 * 1 2 3 22 22 H 1.09000 * 109.46848 * 210.02008 * 1 2 3 23 23 H 1.09002 * 109.46907 * 330.01667 * 1 2 3 24 24 H 1.08004 * 125.61609 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.47302 * 191.51576 * 7 6 2 26 26 H 1.09000 * 109.47546 * 311.51732 * 7 6 2 27 27 H 1.09004 * 109.46572 * 284.29708 * 9 8 7 28 28 H 1.08995 * 109.46875 * 44.29873 * 9 8 7 29 29 H 0.97004 * 120.00318 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.47241 * 166.94318 * 18 8 7 31 31 H 1.08992 * 109.47334 * 69.91117 * 19 18 8 32 32 H 1.09002 * 109.46776 * 189.91584 * 19 18 8 33 33 H 1.09000 * 109.47009 * 309.90849 * 19 18 8 34 34 H 1.09001 * 109.46835 * 51.81768 * 20 18 8 35 35 H 1.08997 * 109.47034 * 171.81846 * 20 18 8 36 36 H 1.09003 * 109.47120 * 291.81802 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5734 -0.6446 -0.0015 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0005 8 7 1.2835 -2.8584 -1.3139 9 6 0.3871 -4.0185 -1.2199 10 6 -0.4601 -4.1008 -2.4636 11 1 -0.2925 -3.4112 -3.2777 12 6 -1.4493 -5.0562 -2.5619 13 7 -1.6531 -5.8961 -1.5706 14 14 -2.4999 -5.1577 -4.1030 15 1 -2.0735 -4.1078 -5.0629 16 1 -2.3359 -6.4953 -4.7268 17 1 -3.9259 -4.9503 -3.7445 18 6 2.3461 -3.0928 -2.3007 19 6 2.9891 -1.7585 -2.6844 20 6 3.4073 -4.0156 -1.6979 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5136 24 1 4.4066 1.3434 -0.0011 25 1 2.7017 -3.1703 0.2042 26 1 1.0910 -2.6659 0.7692 27 1 0.9795 -4.9284 -1.1231 28 1 -0.2574 -3.9099 -0.3477 29 1 -2.3487 -6.5685 -1.6399 30 1 1.9207 -3.5598 -3.1889 31 1 3.5640 -1.3764 -1.8409 32 1 3.6507 -1.9061 -3.5380 33 1 2.2107 -1.0424 -2.9477 34 1 2.9266 -4.9060 -1.2927 35 1 4.1178 -4.3064 -2.4717 36 1 3.9335 -3.4917 -0.8999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893960607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:34 Heat of formation + Delta-G solvation = 5.566746 kcal Electronic energy + Delta-G solvation = -17795.423325 eV Core-core repulsion = 15087.754938 eV Total energy + Delta-G solvation = -2707.668387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.25879 -39.43830 -36.02685 -34.93367 -33.33530 -32.18314 -29.91267 -28.17888 -27.92445 -25.98172 -23.98591 -23.08970 -21.87665 -20.45769 -18.43007 -17.88676 -17.65731 -16.95037 -16.57754 -15.81532 -15.72627 -15.13752 -14.69066 -14.36002 -14.08937 -14.06314 -13.77868 -13.33079 -13.19212 -12.91343 -12.77669 -12.70641 -12.54367 -12.42491 -12.20934 -11.92363 -11.67865 -11.49071 -11.43965 -11.24399 -10.58255 -9.49349 -8.99271 -8.17205 -6.25221 0.61362 1.41227 1.43198 1.55300 1.79920 1.90699 2.42708 3.14881 3.35512 3.42688 3.86744 4.05667 4.08539 4.17227 4.37613 4.45000 4.52231 4.72131 4.74269 4.80488 4.84030 4.93563 4.95668 5.02522 5.06944 5.18992 5.21308 5.26791 5.41650 5.49555 5.58540 5.69446 6.08551 6.38491 6.59179 6.86824 6.89637 7.43461 8.93152 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.007174 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.985437 B = 3902.198815 C = 4233.911237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.015 4.015 3 N -0.518 5.518 4 C 0.176 3.824 5 O -0.210 6.210 6 C -0.029 4.029 7 C 0.129 3.871 8 N -0.527 5.527 9 C 0.210 3.790 10 C -0.514 4.514 11 H 0.057 0.943 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.077 3.923 19 C -0.134 4.134 20 C -0.172 4.172 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.294 0.706 25 H 0.064 0.936 26 H 0.093 0.907 27 H -0.025 1.025 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.778 9.338 2.367 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 N -0.247 5.247 4 C -0.051 4.051 5 O -0.097 6.097 6 C -0.082 4.082 7 C 0.001 3.999 8 N -0.251 5.251 9 C 0.085 3.915 10 C -0.553 4.553 11 H 0.075 0.925 12 C -0.192 4.192 13 N -0.573 5.573 14 Si 0.787 3.213 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.031 4.031 19 C -0.191 4.191 20 C -0.230 4.230 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.309 0.691 25 H 0.082 0.918 26 H 0.111 0.889 27 H -0.007 1.007 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.211 10.185 2.256 14.598 hybrid contribution -0.110 -1.663 -0.368 1.707 sum 10.101 8.522 1.888 13.350 Atomic orbital electron populations 1.19957 0.86493 1.02580 1.02547 1.21550 0.98347 0.87728 1.05722 1.70317 1.02588 1.32154 1.19648 1.28984 0.98109 0.79220 0.98748 1.84420 1.29874 1.25363 1.70092 1.22918 0.80624 0.97578 1.07060 1.20448 0.99272 0.86852 0.93363 1.62145 1.17862 1.39734 1.05377 1.19415 0.90000 0.85567 0.96560 1.21421 1.16482 1.15021 1.02343 0.92475 1.25757 0.98583 0.95315 0.99502 1.70060 1.33854 1.20024 1.33333 0.85453 0.78448 0.77899 0.79537 1.19186 1.20564 1.20532 1.21635 0.90298 0.95686 0.95524 1.21904 0.99611 0.96124 1.01510 1.22320 0.99463 0.99426 1.01802 0.91638 0.91264 0.90530 0.69065 0.91814 0.88882 1.00722 0.97012 0.92771 0.91698 0.91834 0.91428 0.94326 0.94114 0.90922 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.87 10.22 71.24 0.73 -1.14 16 2 C -0.01 -0.48 7.11 41.26 0.29 -0.19 16 3 N -0.52 -15.53 11.29 -304.07 -3.43 -18.97 16 4 C 0.18 3.97 13.23 130.48 1.73 5.70 16 5 O -0.21 -5.76 8.73 -3.64 -0.03 -5.80 16 6 C -0.03 -0.93 4.85 24.79 0.12 -0.81 16 7 C 0.13 4.51 4.85 85.56 0.41 4.93 16 8 N -0.53 -21.68 4.35 -880.05 -3.83 -25.50 16 9 C 0.21 10.58 4.64 85.56 0.40 10.97 16 10 C -0.51 -28.31 8.44 25.60 0.22 -28.09 16 11 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 12 C 0.01 0.36 5.46 84.66 0.46 0.82 16 13 N -0.93 -54.58 13.28 21.45 0.28 -54.29 16 14 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.08 2.87 2.77 44.92 0.12 3.00 16 19 C -0.13 -4.29 8.38 71.98 0.60 -3.69 16 20 C -0.17 -5.55 8.11 71.98 0.58 -4.97 16 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.07 2.25 7.65 -2.39 -0.02 2.23 16 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.29 2.87 8.06 -2.91 -0.02 2.85 16 25 H 0.06 2.10 5.31 -2.39 -0.01 2.09 16 26 H 0.09 3.28 7.32 -2.39 -0.02 3.26 16 27 H -0.02 -1.33 6.60 -2.38 -0.02 -1.35 16 28 H 0.01 0.64 7.67 -2.39 -0.02 0.62 16 29 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.06 2.76 6.95 -2.39 -0.02 2.74 16 31 H 0.06 1.92 4.47 -2.39 -0.01 1.91 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.47 6.68 -2.39 -0.02 1.46 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.91 6.41 -2.39 -0.02 1.90 16 Total: -1.00 -64.43 290.18 1.75 -62.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.07 Total: 9.43 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.67 Total: -13.47 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -6.98 Total: -98.76 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.03 Total: -5.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.43 1.75 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893960607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.246 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds