Wall clock time and date at job start Sun Mar 29 2020 22:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47318 * 299.99486 * 10 9 8 12 12 C 1.53001 * 109.47324 * 59.99872 * 10 9 8 13 13 C 1.50703 * 109.46990 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00059 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00088 * 180.02562 * 13 10 9 16 16 N 1.31511 * 119.99667 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00083 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47294 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47298 * 119.99557 * 17 15 13 20 20 H 1.48500 * 109.47263 * 239.99974 * 17 15 13 21 21 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 22 22 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 23 23 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 24 24 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 25 25 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 26 26 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 27 27 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 28 28 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 29 29 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 30 30 H 1.09001 * 109.46941 * 59.99870 * 11 10 9 31 31 H 1.08999 * 109.47663 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.47292 * 300.01048 * 11 10 9 33 33 H 1.08997 * 109.47300 * 59.99840 * 12 10 9 34 34 H 1.08999 * 109.46980 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46690 * 299.99981 * 12 10 9 36 36 H 0.97000 * 119.99522 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 6 0.0892 -3.9649 -3.5849 12 6 2.4732 -4.7125 -3.5835 13 6 0.6712 -6.2802 -2.9155 14 1 0.5019 -6.8183 -1.9946 15 6 0.4753 -6.9086 -4.1271 16 7 0.6819 -6.2534 -5.2485 17 14 -0.0836 -8.6903 -4.1756 18 1 -0.2433 -9.1970 -2.7888 19 1 -1.3826 -8.7824 -4.8893 20 1 0.9312 -9.5082 -4.8871 21 1 -0.3633 -0.0006 -1.0278 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 4.4065 1.3436 0.0003 25 1 2.5902 -3.1348 0.5157 26 1 0.8916 -2.6029 0.5158 27 1 2.5604 -2.8663 -1.8996 28 1 1.9997 -5.0175 -0.9168 29 1 0.3013 -4.4850 -0.9170 30 1 0.4152 -2.9252 -3.5565 31 1 -0.0114 -4.2864 -4.6215 32 1 -0.8730 -4.0577 -3.0810 33 1 3.2094 -5.3380 -3.0788 34 1 2.3729 -5.0334 -4.6204 35 1 2.7992 -3.6728 -3.5552 36 1 0.5437 -6.6954 -6.1009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894987064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:15 Heat of formation + Delta-G solvation = 14.342123 kcal Electronic energy + Delta-G solvation = -17098.664135 eV Core-core repulsion = 14391.376277 eV Total energy + Delta-G solvation = -2707.287858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.24742 -37.09874 -35.09524 -34.33796 -31.82631 -30.50410 -27.85643 -25.59879 -25.44695 -25.17559 -23.20417 -21.97151 -20.66507 -18.53543 -17.08516 -16.59449 -15.95154 -15.44675 -15.09416 -14.46949 -14.04856 -13.75295 -13.14163 -12.93026 -12.66531 -12.49500 -12.23543 -12.01084 -11.80533 -11.17584 -11.04601 -10.92332 -10.71140 -10.60575 -10.44985 -10.21174 -10.09035 -9.42480 -9.19205 -8.69387 -8.56831 -8.31756 -7.85594 -5.93635 -4.04319 1.52356 2.73392 2.83282 3.29096 3.37684 3.40739 4.19050 4.41953 4.78664 4.91388 4.97720 5.26306 5.32146 5.51122 5.70037 5.82052 5.88392 6.01502 6.15745 6.23931 6.30335 6.44948 6.66134 6.84231 7.02633 7.12625 7.33743 7.40053 7.60609 7.72723 7.77047 7.79326 7.81568 8.17068 8.31072 8.52122 8.97148 9.60992 11.07012 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048657 B = 0.005002 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.318841 B = 5596.556582 C = 5684.027254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.001 4.001 3 N -0.488 5.488 4 C 0.161 3.839 5 O -0.206 6.206 6 C -0.036 4.036 7 C 0.143 3.857 8 N -0.680 5.680 9 C 0.075 3.925 10 C 0.069 3.931 11 C -0.120 4.120 12 C -0.133 4.133 13 C -0.507 4.507 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.286 1.286 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.246 0.754 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.342 0.658 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.084 0.916 35 H 0.010 0.990 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 9.750 9.310 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 N -0.218 5.218 4 C -0.066 4.066 5 O -0.092 6.092 6 C -0.089 4.089 7 C 0.013 3.987 8 N -0.313 5.313 9 C -0.053 4.053 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.191 4.191 13 C -0.546 4.546 14 H 0.071 0.929 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.212 1.212 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.262 0.738 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.161 0.839 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.597 10.545 9.049 14.136 hybrid contribution 0.970 -1.976 0.178 2.208 sum 3.567 8.569 9.227 13.088 Atomic orbital electron populations 1.20087 0.86393 1.02586 1.03363 1.21466 0.98025 0.87286 1.05342 1.70330 1.01443 1.32008 1.18002 1.27892 0.97523 0.79483 1.01684 1.84419 1.30550 1.24552 1.69688 1.23304 0.80347 0.98209 1.07018 1.20329 1.00250 0.84766 0.93327 1.60701 1.37796 1.23446 1.09392 1.22223 0.98119 0.83874 1.01078 1.18104 0.92889 0.94326 0.87851 1.21647 0.97132 0.96076 1.02891 1.21848 0.97120 0.95715 1.04442 1.21124 1.45133 0.96023 0.92271 0.92871 1.24888 0.95318 0.97645 0.95733 1.69845 1.49330 1.35916 0.97191 0.86592 0.78305 0.85408 0.77973 1.19936 1.21083 1.21177 0.90219 0.90730 0.91300 0.73801 0.94041 0.88127 0.83900 0.96479 0.92094 0.96131 0.90697 0.96176 0.96142 0.89727 0.97127 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.22 36.00 0.37 -0.46 16 2 C 0.00 -0.02 7.11 -82.81 -0.59 -0.60 16 3 N -0.49 -7.07 11.30 -11.18 -0.13 -7.20 16 4 C 0.16 1.90 13.23 52.10 0.69 2.59 16 5 O -0.21 -2.89 10.77 5.38 0.06 -2.83 16 6 C -0.04 -0.52 6.90 -35.69 -0.25 -0.77 16 7 C 0.14 2.07 6.02 -4.97 -0.03 2.04 16 8 N -0.68 -11.90 5.70 -115.05 -0.66 -12.56 16 9 C 0.07 1.50 4.59 -3.82 -0.02 1.48 16 10 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 11 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 12 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 13 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 14 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.88 -24.27 9.35 55.43 0.52 -23.76 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 22 H 0.07 0.83 7.17 -51.93 -0.37 0.45 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.25 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 1.32 7.17 -51.93 -0.37 0.95 16 27 H 0.34 6.18 6.76 -39.30 -0.27 5.91 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 31 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 294.30 15.07 4.44 4.44 Total: -1.00 -29.19 294.30 -5.78 -34.97 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.30 Total: 2.71 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 0.31 Total: -11.60 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.26 Total: -43.51 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.06 Total: -2.83 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.19 -5.78 -34.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894987064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds