Wall clock time and date at job start Sun Mar 29 2020 22:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47318 * 299.99486 * 10 9 8 12 12 C 1.53001 * 109.47324 * 59.99872 * 10 9 8 13 13 C 1.50703 * 109.46990 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00059 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00088 * 180.02562 * 13 10 9 16 16 N 1.31511 * 119.99667 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 120.00083 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47294 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47298 * 119.99557 * 17 15 13 20 20 H 1.48500 * 109.47263 * 239.99974 * 17 15 13 21 21 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 22 22 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 23 23 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 24 24 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 25 25 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 26 26 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 27 27 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 28 28 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 29 29 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 30 30 H 1.09001 * 109.46941 * 59.99870 * 11 10 9 31 31 H 1.08999 * 109.47663 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.47292 * 300.01048 * 11 10 9 33 33 H 1.08997 * 109.47300 * 59.99840 * 12 10 9 34 34 H 1.08999 * 109.46980 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46690 * 299.99981 * 12 10 9 36 36 H 0.97000 * 119.99522 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 6 0.0892 -3.9649 -3.5849 12 6 2.4732 -4.7125 -3.5835 13 6 0.6712 -6.2802 -2.9155 14 1 0.5019 -6.8183 -1.9946 15 6 0.4753 -6.9086 -4.1271 16 7 0.6819 -6.2534 -5.2485 17 14 -0.0836 -8.6903 -4.1756 18 1 -0.2433 -9.1970 -2.7888 19 1 -1.3826 -8.7824 -4.8893 20 1 0.9312 -9.5082 -4.8871 21 1 -0.3633 -0.0006 -1.0278 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 4.4065 1.3436 0.0003 25 1 2.5902 -3.1348 0.5157 26 1 0.8916 -2.6029 0.5158 27 1 2.5604 -2.8663 -1.8996 28 1 1.9997 -5.0175 -0.9168 29 1 0.3013 -4.4850 -0.9170 30 1 0.4152 -2.9252 -3.5565 31 1 -0.0114 -4.2864 -4.6215 32 1 -0.8730 -4.0577 -3.0810 33 1 3.2094 -5.3380 -3.0788 34 1 2.3729 -5.0334 -4.6204 35 1 2.7992 -3.6728 -3.5552 36 1 0.5437 -6.6954 -6.1009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894987064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:15 Heat of formation + Delta-G solvation = -6.080520 kcal Electronic energy + Delta-G solvation = -17099.549728 eV Core-core repulsion = 14391.376277 eV Total energy + Delta-G solvation = -2708.173451 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.26035 -38.73383 -36.18510 -35.84572 -33.41202 -31.94650 -29.01867 -27.51151 -27.23855 -26.62334 -24.67106 -23.01983 -21.71452 -20.36263 -18.21238 -17.80213 -17.59190 -16.96981 -16.44944 -15.94732 -15.48900 -15.11402 -14.38618 -14.23810 -14.13227 -14.01728 -13.67114 -13.36841 -13.04266 -12.96939 -12.81642 -12.50937 -12.44568 -12.12642 -12.05978 -11.95720 -11.53527 -11.30285 -10.99686 -10.59269 -10.33940 -9.68556 -9.24115 -7.95569 -6.12409 0.50417 1.42878 1.46606 1.55523 1.72093 1.87105 2.48048 3.27232 3.35336 3.48360 3.80212 3.97062 4.22622 4.43155 4.56797 4.63605 4.73881 4.83740 4.86995 4.90370 5.01910 5.04415 5.16840 5.20605 5.28684 5.43561 5.49530 5.54407 5.71623 5.77265 6.07950 6.19851 6.31841 6.43782 6.55271 6.77315 6.97346 7.55564 9.02942 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048657 B = 0.005002 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.318841 B = 5596.556582 C = 5684.027254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.010 4.010 3 N -0.522 5.522 4 C 0.181 3.819 5 O -0.216 6.216 6 C -0.057 4.057 7 C 0.148 3.852 8 N -0.683 5.683 9 C 0.090 3.910 10 C 0.059 3.941 11 C -0.106 4.106 12 C -0.123 4.123 13 C -0.523 4.523 14 H 0.049 0.951 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.945 3.055 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.294 0.706 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.338 0.662 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 10.290 10.446 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.130 4.130 3 N -0.252 5.252 4 C -0.045 4.045 5 O -0.103 6.103 6 C -0.110 4.110 7 C 0.019 3.981 8 N -0.315 5.315 9 C -0.039 4.039 10 C 0.058 3.942 11 C -0.164 4.164 12 C -0.181 4.181 13 C -0.561 4.561 14 H 0.067 0.933 15 C -0.178 4.178 16 N -0.544 5.544 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.309 0.691 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.042 11.090 10.199 15.371 hybrid contribution 0.884 -2.039 -0.161 2.228 sum 3.926 9.051 10.039 14.075 Atomic orbital electron populations 1.20143 0.85434 1.03681 1.03158 1.21827 0.98964 0.87473 1.04696 1.70365 1.02604 1.32320 1.19875 1.29056 0.98257 0.79065 0.98150 1.84423 1.30298 1.25610 1.69995 1.23224 0.80759 0.98137 1.08864 1.20312 1.01307 0.84966 0.91509 1.60607 1.37725 1.21649 1.11548 1.21881 0.98340 0.85332 0.98318 1.18158 0.92576 0.93188 0.90255 1.21474 0.97195 0.96658 1.01061 1.21685 0.97169 0.96732 1.02468 1.21457 1.45059 0.97527 0.92097 0.93275 1.25546 0.95645 1.00982 0.95612 1.69983 1.49949 1.37076 0.97436 0.85711 0.77679 0.81434 0.77973 1.19409 1.21054 1.21121 0.90948 0.89593 0.90327 0.69087 0.93274 0.86790 0.84340 0.96549 0.91971 0.95046 0.93497 0.96547 0.96248 0.92623 0.95239 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.22 71.23 0.73 -0.84 16 2 C -0.01 -0.28 7.11 41.26 0.29 0.01 16 3 N -0.52 -14.11 11.30 -304.07 -3.43 -17.54 16 4 C 0.18 3.77 13.23 130.48 1.73 5.50 16 5 O -0.22 -5.59 10.77 -3.68 -0.04 -5.63 16 6 C -0.06 -1.58 6.90 24.79 0.17 -1.41 16 7 C 0.15 4.02 6.02 85.56 0.52 4.54 16 8 N -0.68 -22.86 5.70 -517.91 -2.95 -25.81 16 9 C 0.09 3.48 4.59 86.30 0.40 3.87 16 10 C 0.06 2.76 0.57 -52.93 -0.03 2.73 16 11 C -0.11 -5.08 8.09 71.98 0.58 -4.50 16 12 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 13 C -0.52 -27.48 8.01 25.60 0.21 -27.28 16 14 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 15 C 0.02 1.12 5.15 84.66 0.44 1.56 16 16 N -0.91 -50.21 9.35 21.45 0.20 -50.01 16 17 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 21 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 22 H 0.09 1.76 7.17 -2.39 -0.02 1.74 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.29 2.50 8.06 -2.91 -0.02 2.47 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 2.76 7.17 -2.39 -0.02 2.74 16 27 H 0.34 11.71 6.76 -89.70 -0.61 11.10 16 28 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.03 1.38 7.60 -2.39 -0.02 1.37 16 31 H 0.05 2.50 6.07 -2.39 -0.01 2.49 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 35 H 0.03 1.22 6.57 -2.39 -0.02 1.20 16 36 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -61.68 294.30 1.86 -59.82 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.46 Total: 15.38 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.59 Total: -20.96 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -6.19 Total: -93.36 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.04 Total: -5.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -61.68 1.86 -59.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894987064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.740 kcal (2) G-P(sol) polarization free energy of solvation -61.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds